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Detailed information on CNT30576574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006040, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596325Oryza barthiiOryza meridionalis24.0633.2893.27223reverse complement
CNT30108499Oryza barthiiOryza longistaminata55.0273.4999.8510reverse complement
CNT30101628Oryza barthiiOryza rufipogon24.9269.5896.54231forward
CNT30117134Oryza barthiiOryza nivara9.2825.6787.2186reverse complement

Expression of CNT30576574

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRWKLEGGRRAPPLLAGWGSAQAAGEETGVEGGGRGDGTDWGGGGRARGVACLWVICTGP*

>peptide 2 (43 aa)
MGIGASGGRGDGSRGRRARRRDGLGRRRSCTRCRLPMGHMHRPM

Sequence

>CNT30576574
ATTTTATGTATGAATCGTACTTAAAATTTATAAAAATATTGAATTCATATTGTTTCTAACATTCTATTGTTATTAGATTGTACTTGGCATATATCATTTT
GTTTTTTTATTCTAAACTATAGTTGATTTGAATTTATTAATTACCTAATTTAAATATCTATATTATTAGTCTAAATTATTTTTAAACTTAAAAATATTAA
AATATTATAGATATATCACAATGTTTTAGGGACGGAAAGACAAAGTGCGTTCAATGGTTTCAATTTATAACCTGATAAAGAAAGAATGTTAAATTAGATT
CATGCCAAGTGGCACAAATGTCTTAGAAAATTTATAACCTGATAAAGAAAAAAAGTTAAATTAGATTAATGCCAAGTGTCACAGTATGTCCTTTAGAAAA
TTTTGTGGAATAAAAATTACTTATAAGAATATACCTTGATAAAAAGATATTTTGTGTGACTATGGGTAGTTTGTGGTCTAGATTCTTCTTAAGAAATTTA
TGTGAGTTTGGATGAGTACAAATTATGTGAGCTTACATTTTTCGTTCTAAGGGTGTTTGGATGAGATTCAGTAACCAAATTACATATGCTAAAAACGGAA
ATCAAAATTAACAACTTGAAAGTAGGTGGAGCTGGGCAGAGGCAGATCTAACCCTGTTTCGGTTGAACCCCCAAACTTTTTGAGGGATAACGCAGAATAC
CTGATGAGGTGTGGGTAGGGAGGGATGCTCACCGGCGAGCGACGATGCGGTGGAAGCTAGAAGGAGGACGCCGGGCGCCACCTCTGCTCGCAGGATGGGG
ATCGGCGCAAGCGGCGGGCGAGGAGACGGGAGTCGAGGGCGGAGGGCGAGGAGACGGGACGGATTGGGGAGGCGGAGGTCGTGCACGCGGTGTCGCCTGC
CTATGGGTCATATGCACAGGCCCATGA