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Detailed information on CNT30576569


BLAST search results

BLAST vs Swiss-Prot:
sp|P51431|R27AB_ORYSJ, E-value = 2e-88

BLAST vs NONCODE:
NONBNAT005965, E-value = 9e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Oryza barthiiOryza sativa24.6359.696.64298forward
CNT30316655Oryza barthiiCorylus avellana18.6871.7592.04226forward
CNT30628786Oryza barthiiVigna unguiculata18.8446.5392.11228forward
CNT30178120Oryza barthiiSecale cereale19.2626.0695.71233forward
CNT30283510Oryza barthiiTriticum aestivum19.2632.4196.57233forward
CNT30220676Oryza barthiiHordeum vulgare19.2641.3996.14233forward
CNT30586129Oryza barthiiMusa acuminata18.642.2991.11225forward
CNT30553804Oryza barthiiOryza glaberrima31.0762.3597.34376forward
CNT30435195Oryza barthiiAegilops tauschii19.2640.2496.14233forward
CNT30241998Oryza barthiiAvena sativa19.2629.4296.14233forward
CNT30656101Oryza barthiiTriticum dicoccoides19.2631.2896.57233forward
CNT30456592Oryza barthiiSaccharum spontaneum18.2626.8995.02221forward
CNT30130551Oryza barthiiLolium perenne19.2634.2196.57233forward
CNT30720110Oryza barthiiTriticum spelta19.2636.8796.57233forward
CNT30341903Oryza barthiiEragrostis tef19.2627.6196.14233forward
CNT30368046Oryza barthiiSorghum bicolor19.2638.296.14233forward
CNT30582668Oryza barthiiEchinochloa crusgalli18.638.7996.89225forward
CNT30499448Oryza barthiiDigitaria exilis19.0930.695.67231forward
CNT30116662Oryza barthiiOryza nivara58.3531.2593.77706forward
CNT30594254Oryza barthiiEragrostis curvula19.2628.1197233forward

Expression of CNT30576569

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAAAGEGSPPRLRRRRRRRREGWGEGG*

>peptide 2 (47 aa)
MIKKLWRLPPLRLAISTIASQSMQKNHFLIAISEISKTHQSNETDTN*

Sequence

>CNT30576569
TTTGGATATACAATTGAGGGTTGAATTATCAGAATGAAGCATAATTCAACCCCCCGCACCCCAAAAAAAACATAAGATTAATGAAAGTGTAATTGTAAGA
AAAAAAAACAAACTCTGTAACAACCCCAACCGCTTCAACTTGAGTCATACCATCCGCATTCAGTACAACATCGCCATACAAGAATAAAAATTTCTAAGGT
AACCCTATGCTTCATTGCAGAGTATACAATCAGATTAACAATTGCACATCTAACTGAACGGATCAGCAGAAATGATTAAAAAATTATGGCGACTACCTCC
ATTGAGACTAGCAATCAGCACAATTGCATCCCAGTCCATGCAGAAAAATCATTTTCTAATTGCAATCAGTGAGATCTCAAAAACACATCAGAGCAACGAA
ACTGACACAAACTAATCATCAGACAGGAATCAGAAAACACAAGTGAACTCGCATCACATCATCAATTCGGTAACAGATAATAATATTCCAAGAGGCTACT
ACTCAAAAAGTTTTCCAATTGTAAACAGAGAACAAAACGCATATAATCTGAATAACATGTAACCAGCAGCAGCTCATCTCAGCTCATGATATAACAGATA
AAAAGGAATGAAAAGCATCAGAGCAAAGCGAGCAGCAGCATCAACAACCTAGGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGG
CGATCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGTTGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCCACCTTGT
AGAACTGGAGCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAG
GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG
TCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCT
TCACGAAGATCTGCATCTTGGCGGCGGCGGGGGAGGGGTCGCCTCCGCGGCTGCGGCGGCGACGGCGACGGCGGCGAGAGGGGTGGGGCGAAGGTGGCTA
GGGTTTTGGG