Detailed information on CNT30576560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000518, E-value = 2e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30447580Oryza barthiiSaccharum spontaneum3.6424.4890.1471forward
CNT30370252Oryza barthiiOryza glumipatula64.5539.6697.381260forward
CNT30102303Oryza barthiiOryza rufipogon5.1720.0496.04101reverse complement
CNT30604419Oryza barthiiOryza punctata4.2530.493.9883reverse complement

Expression of CNT30576560

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MCKIYNWSRWGHRFIAIIIEVFLKKYRHLCAI*

>peptide 2 (33 aa)
MRLSIYLDLVVYVLPTICKYVIIVYFVLSCFIT*

>peptide 3 (38 aa)
MSELCYEKKIIILPKINKSIFFINMLSTFLLRGILTLI*

>peptide 4 (33 aa)
PPPPFIWRSVTGAHQPLGWAPPIRARVKAPLSR*

>peptide 5 (36 aa)
MAPPFGFNDPDSTQAHIKCTRTERRGLRLGLRVCHV*

>peptide 6 (49 aa)
MSEALRLTSSSSSPAFFVFLKQVTTRCLCPAGGFSPLRHHLLTASFGSP*

>peptide 7 (44 aa)
MIPHKPNFSHPSSLHHCLDSCIAIHHCSIPLLLYLRHYPVSPAS*

>peptide 8 (36 aa)
STPFYMAQCDGGPPAIGLGTPDQGAGQGPLEPLRSI*

Sequence

>CNT30576560
CCTCCACCCCCTTTTATATGGCGCAGTGTGACGGGGGCCCACCAGCCATTGGGCTGGGCACCCCCGATCAGGGCGCGGGTCAAGGCCCCCTTGAGCCGTT
GAGATCCATCTAACATTAATATTAATGTGGGCAAACAGCACCATAACTTATTGATATAGATGCATAGAGTAAATATTTTTTGCAAACTCGATGGTATTGA
GTAGAGATGGGCTTACTCAGTAGCTTATCATAGAAATGAGCAAACTCGATGGCATAGAATTTTTTTTTCTTTGAACAGACACTGCGATATGTTTTCTCAT
CCAACATTTGTTGTATTTTGTTTGTGGTAGACATTATTTCTTATTTATTTTGTAATAGGAACTCCTTACAAGGCATAAATATAGTGCAGCTAGCAGAGTT
TTTCTTTGAAAGAATTATGAGGGGGCAAGTTTTTTCAACTTTGATTTGAAATGGGTTTTATTATTTTTCTTACAGTACTAGTAGCTAAATGTCTGAGCTT
TGCTATGAAAAAAAAATCATAATATTGCCTAAAATAAATAAAAGTATATTTTTCATCAATATGTTATCCACCTTTTTGCTACGAGGAATACTCACGTTGA
TTTAATTTTATGAGGCTATCTATCTATTTAGATCTAGTTGTTTATGTACTACCTACAATATGTAAATATGTAATTATAGTTTATTTTGTTTTGAGTTGTT
TTATCACTTAAAGTACTTTTAAGTATGATTTATATCTTATACAATTACATAATTTTGTGAATAAAACGAATGGTCAAACATTTGTTCAAAAATCAACGAC
ATCATTTATTAAAAACCAGACTGAGCATATATTAAGAAGTTTAAGGGCTAATGTGTAAAATCTATAATTGGAGTAGGTGGGGTCACAGATTTATTGCCAT
TATCATTGAAGTCTTTTTAAAAAAGTATAGACACCTGTGTGCAATATGAACAGGAAATAAAGGCACTCTCTCTATTTCTAATTTGACAGAAAACATCCAA
GGAAATCTTGCAAATTTCATACTATTAGATTGCTTTAAGATTTGTATGATACCACATAAGCCTAACTTCTCTCATCCCTCCTCACTCCACCATTGCCTCG
ACTCATGCATCGCCATTCACCACTGCTCGATTCCTTTACTCTTATACCTTCGCCACTACCCGGTCTCACCGGCTAGCTAGTAGGCATGAGCGAGGCCCTT
CGATTGACCTCCTCATCCTCTTCCCCTGCTTTCTTTGTCTTTCTCAAACAGGTGACGACGAGGTGCCTTTGTCCCGCCGGTGGCTTCTCACCACTTAGAC
ACCACCTCCTCACTGCAAGCTTTGGTTCGCCCTAGCCACCAATACCGGTCCATCTCACTCTTCTCAATCCCCATGGCTTTGGCATCGTTCACCTATATCC
ACCACTTCCTACATCTATCCCTCTAAGCCTAGCGTGACCTCCTCTCTTCTCCCTCCCACCCCAGACCCAACCCAGGATTGAATTGTCGCTGATGTCCATA
CGTGCGTGAACACTCGACATCAGCCTTTTCGAAGACGAAAGCATCCAGGCGTGTTGTTTATGTTCTAAAAAAAAAGAAAAAAAAAGAAAGGCGTGTTGTG
TATGTATCCGAAGTAGGATGGCACCACCTTTTGGCTTCAACGACCCTGACTCAACTCAAGCGCATATCAAATGCACAAGAACCGAGCGCAGGGGACTCCG
ACTCGGACTCCGAGTCTGTCACGTATAGCCGACCATAAATAGCCGCCGCGCTCCTCGTCTCGTCCTTCCCCCACTTCTCTCCCATCCTCCATCGCACTCA
CTCCTCACCTCGATCCATCTGCGCCTGCGCGGGCCTCCCCCTCCCATCTCCATCTCCCGCGGATTCGCGAAGCGCCTCCCATCTTCATCTCCTCCCCCGC
GCCGCGGACCTTACGCGGCCTACGCACTGTGTGACATGGCGCCCCGTGGGCG