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Detailed information on CNT30576554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101617Oryza barthiiOryza rufipogon91.896.9899.6996forward

Expression of CNT30576554

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PRPLFPTNVETVGSFSNSTSFLGLPGPLFPIEEAPSESRHLTSPPF*

Sequence

>CNT30576554
CCACGGCCTCTCTTTCCCACCAATGTAGAAACTGTAGGTTCATTTTCCAATAGCACCTCCTTCCTAGGACTCCCAGGCCCTCTGTTCCCCATTGAAGAAG
CACCATCAGAGAGCAGACACCTAACTTCACCTCCATTTTGAACGGCTCCAGCCTCACCTCCATCTGCAGTGTCTACCTGTGCTGCCACAACACCTCCAGC
TTCCAGTGGCCTCTTCTTTCTTGGCCTCCCAGGCCCTCTCTTAGTCATTGCAGCACCGCCAGAGAGCACAGACCAAGATTGCAATGGTTTATCCTTTCTA
GGGCGCCCACGGCCACGCTTCACTCCCAACACAGCAGCAGCAGTGGGTGGCACTGACAGCACAGGAGGAGTGGCATTCTTGCGAGGGCGGCCAGGTCCAC
GTTTGAATCCAGACGGCCTCCCAGGTCCAGGCTTGACTAGAGGAGTGGCGTTCTTCCTTGGGCGTCCAACACCCCGCTTCAGTGGAGATGCAGGCGGCGG
AGCAACGGGAGAGGCAGCAGCAGCAGCATTCTTGCGCGGCCTCCCAGGTCCCCGCTTAACTCCCAGGCTCAACGGCGTAGCAGTGGCATTCTTGCGCGGT
CTCCCAGGTCCCCGCTTCACTCCCAGTCTCAACGGGGTAGCAGCAGCATTCTTGCGCGGCCTCCCAGGTCCCCGCTTCACTCTCAGGCTCAACGCCGTAG
CAGCAGCAGCAGAGGAGGTGGAGGAAGCCACAGGGAGAGGGTTCTTCCGGGGTCGCCCGCGCCCAGGCTTCGCCTCAAGCACAGGAACCGGAAACAGGGC
TGTATTCTTGCGGGGTCGGCCGGGTCCGCGCTTTTGAGGCGGCGCGGAGGAGGAAGCTTTCTTGGGCGGTCGTCCTCGTCCCCGTCCTCGAGCGGCGGTG
GCGGAGGTGGAGAGAAGGTACGAGTGTCCAGACATGAGGAGAAGGCCCTGTGACCTGAGGCGGCGGAGGTGAACGGTGAGGAGCGCGTCGTGGTGAGAAG
GGAGGCCGGAGAAGTTGTCGGAGATGTACTTGGCGATGGCACGGCGGCTGGAGATGATCGGATCTGGAAGCTCCTTGAGCGCCCG