Detailed information on CNT30576541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Oryza barthiiAvena sativa18.2490.6686.56573forward
CNT30452219Oryza barthiiSaccharum spontaneum60.6658.4385.831906forward
CNT30346251Oryza barthiiEragrostis tef18.9498.1886.22595forward
CNT30362965Oryza barthiiSorghum bicolor61.367.5385.151926forward
CNT30107897Oryza barthiiOryza longistaminata74.0910098.22328forward
CNT30580242Oryza barthiiEchinochloa crusgalli60.6673.785.521906forward
CNT30497727Oryza barthiiDigitaria exilis13.1199.0485.19412forward
CNT30557998Oryza barthiiPanicum hallii33.2942.2887.381046forward

Expression of CNT30576541

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLQWIIMRGSTNIRHQLINITQPARTLHAISGTTLMAYYRQSVHNNMNELTEFDTTNYTLGG*

>peptide 2 (91 aa)
MRVPVPAEKIELPLLTIDIGMAKISRAIFERVGNLRVLSFHQFRMSNSWMRGVRDSSRYCSSSDFVGWLVAISERYISKSTSPSPVEGAVV*

>peptide 3 (31 aa)
MPGSPDSGMDASFGYGRLNQPHAGVDAALAM*

>peptide 4 (32 aa)
MGITPYNKQLALEHEVVLVGEIIPQICTVYIM*

>peptide 5 (39 aa)
MNSVIHHLNILRSFNTINFRVAELNKLHLEAWIHHNSNS*

>peptide 6 (41 aa)
MDYNEGKYKHKAPADKYYAASAHTTCNIRYNSDGILQTKRT*

>peptide 7 (31 aa)
MLLLHKRGGITAILWCIHLDQRGTRRLRGSW*

Sequence

>CNT30576541
AAACAATACAATCAAGCAGAAATATAATATGAATTCAATCAGGTGTAAACACTAAACAATGCAGGAGAAGATTTAAGTGTTAATTAATTAAACCCAAGCG
AGGAAAATAAACATGAAAATTGACTCAAAACCTCAGCGAAGGAGAACAAGTCGTGAACTGGACAGAAAGAAGGGATTGGATTGACCTTGAAGGCGACGTC
ACCGTCGTCGCCCTTGAACTCGCCCTTCTGCAGGTGGCAGCGCAGGTGTAACCAAACTTGTACTTGGCGGCGAAGTGCTTGGAGAAGCCGAAGCTCTTGT
CCATTGTCCAGCGCCATGCCGGGCTCGCCGGACTCAGGGATGGACGCCTCGTTCGGCTACGGCCGCTTGAACCAGCCGCACGCAGGTGTCGACGCTGCCT
TAGCTATGTGACATATCACAAAGGCACAGAACGATCACATGCTACAATGGATTATAATGAGGGGAAGTACAAACATAAGGCACCAGCTGATAAATATTAC
GCAGCCAGCGCGCACACTACATGCAATATCAGGTACAACTCTGATGGCATACTACAGACAAAGCGTACATAACAACATGAACGAGTTAACAGAGTTCGAT
ACAACAAATTACACCCTAGGAGGATAAGCTCAGATCACAATCAGTTCATAGTCCCTGCCTAAAATACGCCTAGCAGTTAACTTCACAAATAGGTACCATT
GGTACATGCTGTTGCTTCACAAAAGGGGGGGAATCACGGCGATCCTATGGTGCATCCACCTTGACCAGCGTGGTACTCGGCGCCTCCGGGGTAGCTGGTG
AATACTGAAGCCAGTCTTTGGCGCAGAAGAGCGCCTCCACAATTTCTGGACGCAATGAGCTTCTGTAGTCATCAAGCATGCGAGTTCCTGTTCCAGCAGA
GAAAATAGAGTTGCCGCTGCTCACCATCGACATCGGAATGGCCAAGATATCCCGGGCCATCTTTGAGAGAGTAGGGAACTTGAGAGTGTTGAGCTTCCAC
CAGTTCAGAATGTCGAATTCCTGGATGCGTGGAGTGAGGGACTCATCCAGGTACTGTTCCAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCTCAGAAA
GGTACATATCAAAGTCCACAAGTCCATCGCCGGTCGAAGGAGCAGTTGTTTGAGTACTATTCTCGCTAGCAGGTGCATTATTACCTTCCCCTTGCTCAAC
ATAGGCCGGCGTCAAGGGGAGGGGCTGTGCAACATACTCCTTGTAAAGCTCATGAACAGCGTCATCCACCACCTTAACATACTTCGCAGCTTCAACACCA
TAAATTTTCGAGTAGCTGAACTCAACAAGCTTCATCTTGAAGCGTGGATCCATCACAACAGCAATAGCTAACACAAGGTTGCAATCTTTCCAGTACTTGT
CAAACCTCTCGTGCATATCCTTGGCAATGCTGCTGAAAACAGGGTCTTCATGCCCTGTAGCATTTGACAGCTCGAGCTGAAGTTTCCATGCCTCATGGAA
AAAGAGATTTGAAGTTGGATTTGCTGCAGCCATGATGCTATGTGCTGAGTCATACAATAGCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTCCAGTCC
TCAGCGGACGGTGCCTCGTTGTAGTTGTCATCACTTGTCTCTAGAGTAGAAAAGGCCTGCTTATAATCCAAGGCAGCCAGCAGCATGAGATAGGTAGTGT
TCCACTGAGTCGTAACATCCAGACAAAGGGTCTTGGTACTTGGGATCTCTAGCTGCAGAGCAATCTCTGCAAACTTCTCCTCACGGGTAGGAGAAGCTTT
TATGAACTTGATGCTTTCACGGATATTGTAGATGACACCATGGATTGAAGCAATGACATCCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACA
ACAAACAGTTGGCCCTTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTTGCACTGTATATATCATGTGATGAGCAATCATTGTCCAATG
TGATGGTGAACAGTTTGTCCTTCATATTCCAGTCCGAAAGGCTTGCACTAATAGCTTCACTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATGAA
GTTTAGCATTCTTCGATGTATCTTCCACTCAGAGTCAATAAACTGCCCAGCAAGTGAAACATAGCCAAGAGTTTGGCTAGTTGTCCACAATCCAATGGTG
AGGCTGATCCTTCCAGGCATAGTGCTGAATGCTTGCGTAAGGTTTTCCTTTTCTTTCTGGTAAACAGCATACACCTCCCCCTCCATTGTCTCAACATCTA
CAACCCTGAAACGTGGCTGCAGACTGTCAATAAAGGTAGTGAACGCTGGCTGTTGAACAATGTGAAGTGGGTAGTCATGCAAAATTATCATCTTTGCCAG
ATATGAGCAACTGCGGTCTTGATCAAAAGCAGCATTTGCATAACCAGTATATCTGTAACGCCTCTTAGATGGGCGCTCCACAGTACCTTCACCATCATTG
TCAGTCCCTCCAGCTGGAGTCAGTGCTAGCTTGTGCTCTTGGTTCTTAATTTTAGGGCATGAACCCAATGTAATGTGCCTCTTGAGATGGCTAGTACCCG
CAATTTTTGAACCAGAGCTGTAAGCAAAAGTTTGCTTGCACAGTTTGCAGCACGCCCGTGTAGCCCCTCCAGAGACAGCTTCAATAGTGAAGTGCTCCCA
CACTAGAGACTTCTTCCTACGGCGCCTTAATGTTGGAGGGGTACTGATCTCAGCACTGACCAATTCATTTCCTTGGACCTCGTCACCTTGAGTTAAGTCC
TCAGCAGGGACCAATTCATCACCCTGAACTTCCTCAGCTTGAGCTTCCTCATTGCTTGGGACAATCTCGTTACCTTGAACCACCTGGTTGTCGTTGCCAG
TTTCCTCAGCCATGCTTCTTGGCTAGTAGCTAGAACTCACAAAGTCTGAGGAGGAGGGGGAGAGATGGTGGTGGTGGTGGCAGATCCGGACTTGGTAGGG
CTCGGCCCAAGAAGCTCCAAGGCCGGGAGAGCGGCGAAGCAGATCTGGTAGTATTCTGCGGGGAGGAGGAGGAGAGGGGAAAGAAAGGAAAGGAAATGAG
ATGGGGCCTGGCCGCCTGGGAGGGTGGGGGATTAGCCGCGCG