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Detailed information on CNT30576527


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604148Oryza barthiiOryza punctata84.0587.8392.6743forward

Expression of CNT30576527

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFT

>peptide 2 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

>peptide 3 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 4 (61 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

Sequence

>CNT30576527
TGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAGTTTAAACTGCTATGACCCAGCAAATGTTCGGACAGCAGTACAGCA
CATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGATAATGCAGACACAGGATAACAGTACAGCAGCAATTCCATCAATCAA
TGATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCG
GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAA
TGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAG
GGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATG
GTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACAAAGATTTGCATGCCTCCCCGGAGGCGGAGGACAAGGTGGAGGGTGG
ATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC
CTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAA