Detailed information on CNT30576507


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021275Oryza barthiiCitrullus lanatus4.1421.5994.1268reverse complement
CNT30225649Oryza barthiiHordeum vulgare6.2746.1999.03103reverse complement
CNT30438044Oryza barthiiAegilops tauschii6.2739.92100103reverse complement
CNT30596720Oryza barthiiOryza meridionalis10.6434.25100175forward
CNT30102207Oryza barthiiOryza rufipogon14.8435.47100244reverse complement

Expression of CNT30576507

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MASRFFTTPNLYRLPLITPFLGYECGKRLLSFHII*

>peptide 2 (48 aa)
MRRRTKGLERVMDPEALFLHPPDQTLEMLGYMEGRQDMPISKLLGKVM*

>peptide 3 (60 aa)
KAKDDGVEASADLPAADPEGPASLGPGPGGFSIAEATSGPSTKKNENKPEKDPIRVATSK*

>peptide 4 (34 aa)
MIRLLGSSEVLKKTFFLVFSFLPPLCAAAMRASR*

>peptide 5 (30 aa)
MWWIPFRLYLCHFESVEDDFARPSNFFHFY*

Sequence

>CNT30576507
AAAGCAAAGGACGACGGAGTAGAGGCTTCAGCTGACTTGCCCGCAGCGGATCCGGAAGGACCCGCTTCACTAGGCCCAGGCCCTGGTGGGTTCTCCATAG
CGGAAGCAACCTCTGGGCCTTCCACAAAAAAAAACGAAAACAAACCAGAGAAGGATCCAATTAGAGTAGCTACATCAAAGTAGCTCAAAAAACATTTCCA
CACTTTAGGATCTGCATTTACACTTTTTTTTAGGTTTCAAAAAAGCATATTTAGGTCCACACGTGAAAGAACCTCATGAATATCGAAGACTGCTACTGAG
TTGACACCATTCCAAGAATTGAATTCATTCCGCTGACAGAAGAGGGGGACGGGCAAGGATGATCAGACTGCTTGGTTCGTCAGAGGTATTAAAAAAAACC
TTCTTTTTGGTCTTTTCTTTCTTGCCGCCACTTTGTGCCGCTGCAATGAGAGCGAGTCGTTAGTGGGATAGGTTTTTCTTGTAGGAGAGAGATCGGGAAT
CCAGACAACAGGGCTAGGGTTTGGGGCTAGTGCGGCTAACTTCCCCTTCTCTACCCGTATCTTGTTCGTTCTGGAAACACGTCTTCCTATTCCATCTTTT
CCCGAATCTCCCTTAACGGAAGAAATAGAAGCTCGAGCGTCATAGAGCGGGTTCGCTTGTAAATAGGCCCAGACCAGCGCCTCTTTGTTCTACATGGCAT
CTCGATTCTTCACTACACCCAATCTGTATCGACTCCCATTAATTACACCTTTTCTAGGTTACGAGTGTGGAAAGAGACTTCTTTCTTTTCATATTATATA
GAATAGTCTTCTCTTCGTGCGTTTCCGGCTTTTTGCCTTCAGCACGCCATCTAATAAATAGGAATAGGAAAAAAAAGACTCCCTTTTCTTCCTATTGATC
TTGACGTCGGCGTGCTCCCCTGTCCTTCCACCCTTCTCGGCAGGAGGGATCATAGCAGGGAGCGACTACTACAGTATCGGCCTCGTTACTATGTGGTGGA
TTCCATTCCGTCTCTATCTATGTCATTTCGAGAGCGTTGAAGACGACTTTGCTCGACCCTCAAACTTCTTTCACTTTTATTGACTTTAGGCACTTCAAAG
AATAAAGCCTCTCAAAGACACGAAAAACTAGAATGCGGTAAGAAATCCCGGGACCTAGAAATTCATTTCGTACAATTGAACCTTTTCAAACTGTTTCTTT
TTGAGAACCAAAAAAACTTGTGCCAAAATAACGGATGCGAAGAAGAACAAAAGGCCTTGAACGCGTAATGGATCCTGAAGCACTATTTCTGCATCCCCCT
GACCAAACCCTAGAAATGCTAGGGTATATGGAAGGTAGACAAGATATGCCTATTTCAAAGTTACTAGGTAAAGTAATGTAAGGGATAAGTAAAGTAAGAA
GAGAAAGATAGTCAAAGTTGACATCTTGAAATCGACTCGCATGGGCGTGCTTATAAAAGGAGGCTAAAGCATAAAACAATAATGAAAACTATAGGCATGT
TGGATCATCTATAGTCCTAGAACATGTAGGACCTGGAAAATGAATCCGAGCGAGTATACAAATTGAAGGGATCAAAAAGGTTAGCAACTTCATACTCTAT
TAATGTATGGTTAACATATTGCATTTGTAGCTATATTTCTATAC