Detailed information on CNT30576506


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693746Oryza barthiiOryza sativa49.437.8899.6247forward
CNT30520681Oryza barthiiSetaria italica15.420.6485.7177forward
CNT30553785Oryza barthiiOryza glaberrima72.610099.72363forward
CNT3067432Oryza barthiiLeersia perrieri53.437.3988.39267forward
CNT30596221Oryza barthiiOryza meridionalis98.496.4798.58492forward
CNT30109966Oryza barthiiOryza longistaminata99.894.5198.8499forward
CNT30101607Oryza barthiiOryza rufipogon100.262.5599.6501forward

Expression of CNT30576506

Peptides detected in this lncRNA

>peptide 1 (92 aa)
PSHQTEDKLKMSSSCISSFCNKTIFMRILVVIALLLLTLGVLPFAPHSHSETSNTSRKSRYILISGCNNYCSVACCYCNIHRFPPVCEKCCK*

>peptide 2 (38 aa)
MTHILFKEQCTGILFLCNPTFVFLLSELSLFLLLSSLC*

Sequence

>CNT30576506
GTCCAAGTCACCAAACTGAAGATAAGCTGAAGATGTCGAGTAGCTGTATTAGCAGCTTTTGTAACAAGACCATCTTCATGAGGATACTTGTCGTTATAGC
TTTGCTTCTACTGACCCTTGGAGTTCTTCCCTTTGCACCACATTCACACAGTGAAACTTCGAACACCAGTCGAAAATCTCGGTACATTCTTATAAGTGGT
TGCAACAACTACTGCAGTGTGGCATGCTGCTATTGCAACATTCACAGGTTCCCTCCAGTTTGTGAGAAGTGCTGCAAATAATTCATTAAGTCCATGACAC
ATATCTTGTTTAAGGAACAATGCACAGGCATTCTTTTTCTGTGCAATCCCACCTTCGTTTTCTTATTGTCTGAATTGTCTTTGTTCCTGCTGTTATCTTC
GCTATGTTGAAGCAACAGATATAAACCTGACAATACCATCTTTTTTTATCAGTGACTTATTTCAAACTTGGTATAAGATACAATACCAGCGCAGCTATAA