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Detailed information on CNT30576494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291829Oryza barthiiTriticum aestivum21.754.2992.31169forward
CNT3017991Oryza barthiiZea mays21.883.4193.53170forward
CNT30687393Oryza barthiiTriticum urartu21.7531.8992.9169forward

Expression of CNT30576494

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHMDILLIHSSIMSNFHALINVKLVLQNKLERNWTTRFCS*

Sequence

>CNT30576494
CGACATTATTCAACACTTGCCTCTAGATGCACATGGACATTCTCCTTATTCATAGCAGCATCATGTCAAACTTTCATGCACTAATTAATGTCAAACTAGT
TCTACAAAACAAATTGGAGAGGAATTGGACCACAAGATTCTGTAGTTAAATAGGAATTATTAGGTCTCAAGGTCTTTTTGGCAGAGCTTCAGCTTCAAGA
ATTCTTGGAGCTGGATATAAGACCCTCTGCTCTTTTTTGGGTACCAACAATTAAGAAGCTTTTTCCCTGACTTGCTGCATCAAAAACTAAATCACAAGCT
TCTGATAAAAAACGGGTGGTTCTAGCGAGATTTGTAATATGAGTACCTTTATGCTTTGCTAAGATGTAAAGGGCCATTTTACGATTCCATTTCTTATTTG
GGTGAGCCATCTTATTCATACTTTAGAGTTTAGACTGAAATACTGGCTTTTACCACCTCATTTTAGCCTACAAACTTCATGTTCTGCAAGAATCCAGGAG
TTGGAGCTCTGCCAAAAAAGCGCTTAATTGTAGCATATCTGATAATCTGATTTCAGTCTACCACACAATACCTTTTTTTTAATTGTAGTCTACTAGCTGG
ATGCCTGTGCTTTGCTACGGATAAAAAATATATTATAATATTAACAGGTACCAGAAATAACATGCGCTTTGCCATGAAATGTGTTACCTATCATTTTGCT
ATATGTGGCTATCAATTTAGATTTGATTGATTTTTAATATTTAATACGCAGAAGTTTATGGGGTAATTTGCAAAACT