Detailed information on CNT30576477


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END8|RR8_ORYNI, E-value = 8e-58

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Oryza barthiiOryza sativa60.576.65100278forward
CNT30641762Oryza barthiiNymphaea colorata37.254.9383.63171forward
CNT30550215Oryza barthiiIpomoea triloba37.693.7883.82173forward
CNT30541469Oryza barthiiBrassica napus24.47.3288.39112forward
CNT30553279Oryza barthiiOryza glaberrima60.5725.88100278forward
CNT30147499Oryza barthiiMedicago truncatula32.039.3384.35147forward
CNT30438367Oryza barthiiAegilops tauschii16.1230.5893.2474forward
CNT30310337Oryza barthiiCamelina sativa24.46.786.61112forward
CNT3083474Oryza barthiiBrassica juncea24.43.3588.39112forward
CNT30134355Oryza barthiiLolium perenne57.9510.5694.36266forward
CNT30689031Oryza barthiiTriticum urartu60.78596.77279forward
CNT30351320Oryza barthiiEragrostis tef46.4187.396.24213forward
CNT30364284Oryza barthiiSorghum bicolor16.1229.7293.2474reverse complement
CNT30434619Oryza barthiiPapaver somniferum37.2525.5285.96171forward
CNT3059026Oryza barthiiAmborella trichopoda31.3710.0385.42144forward
CNT30585636Oryza barthiiEchinochloa crusgalli67.765.4295.82311forward
CNT30604550Oryza barthiiOryza punctata60.5712.6992.09278forward

Expression of CNT30576477

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ASTTKPSKVIFASLGLFFFSPIFLFCHIFFSYFSFFI*

Sequence

>CNT30576477
GGCTTCCACAACTAAACCCTCGAAAGTAATTTTTGCTTCTCTCGGACTTTTTTTTTTCTCTCCTATTTTTCTTTTCTGTCATATTTTTTTCTCCTATTTT
TCTTTTTTTATTTGAAAATAAAAAAACGTTGTATTTTTGTTTGAAAAATAGGAAGTTCAAGATAGAATTTGGGTACTATAACTATAGGCGGGGCGATTAC
CATATATAACATAAGACTTCTCCCCCAATTCTGTTTAGTCGAGCTTCTCGATCTGTCATTATACCTCGAGAAGTAGAAAGAATAGCAATTCCCATTCCGC
CCAAAACCTTAGGAATTCCTTGATAGTTGGCATAAATTCGTAAGCCAGGTCGGCTGATACGCTTTAAAAAGGTTCTAGTTCTATATATTCCCTTTCTAGT
CTTTCTCTTTTGATGTCGCAAAGTTGAAACCAAGAAATATCTGTTACTTTCCTGATGTT