Detailed information on CNT30576476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002486, E-value = 5e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689988Oryza barthiiOryza sativa40.5630.9183.33204reverse complement
CNT30369817Oryza barthiiOryza glumipatula36.1818.3785.16182reverse complement
CNT30107677Oryza barthiiOryza longistaminata40.5664.5682.84204reverse complement
CNT30100934Oryza barthiiOryza rufipogon36.1810.7888.46182forward

Expression of CNT30576476

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MWRLSQRETHVSPTSQDATSSISFLLSLSLTLLSSGQAGGWRGGHRVRRVAATAAGCGRSMEATSRVSNTNNHPAATANLLVGGDDAAVH

>peptide 2 (58 aa)
KNLRKYLCILIQNNTVLRLVICNKLYKINYGKVHRRSLNLSSSHKIIPQPQNQISAVP*

>peptide 3 (30 aa)
MPRHLSLSSSLSLSLSSPLGKPAAGEEVTG*

Sequence

>CNT30576476
AAAAATTTAAGGAAATATTTATGTATTTTAATACAAAACAATACAGTACTTAGATTAGTGATTTGTAATAAATTATATAAAATAAATTATGGAAAAGTAC
ACCGAAGGTCCCTAAACTTGTCATCGAGTCACAAAATCATCCCCCAACCGCAAAACCAGATATCGGCCGTCCCTTAACTAATCAAAACCGGTCACAATAG
GTCCTTTGATGTTTTTGTCCCCGGTTTTGTTCTATGTGGCGGCTTAGTCAGCGTGAGACCCACGTGAGCCCCACGAGTCAGGATGCCACGTCATCTATCT
CTTTCCTCCTCTCTCTCTCTCTCACTCTCCTCTCCTCTGGGCAAGCCGGCGGCTGGAGAGGAGGTCACCGGGTGAGGCGTGTCGCCGCGACGGCGGCTGG
CTGCGGCCGTTCCATGGAGGCCACATCCCGCGTCAGCAACACCAACAACCACCCGGCGGCGACGGCGAACCTTCTCGTTGGCGGCGACGACGCGGCCGTC
CAC