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Detailed information on CNT30576447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693422Oryza barthiiOryza sativa10042.3199.67300forward
CNT30673503Oryza barthiiSetaria viridis1922.8989.4757forward
CNT30178572Oryza barthiiSecale cereale2212.4186.3666forward
CNT30285390Oryza barthiiTriticum aestivum21.6717.5787.6965forward
CNT30220389Oryza barthiiHordeum vulgare21.6714.8787.6965forward
CNT30384303Oryza barthiiTriticum turgidum21.3310.5887.564forward
CNT30435258Oryza barthiiAegilops tauschii2223.2487.8866forward
CNT30240485Oryza barthiiAvena sativa27.6728.1490.3683forward
CNT30657122Oryza barthiiTriticum dicoccoides21.3312.2487.564forward
CNT30131491Oryza barthiiLolium perenne2515.218875forward
CNT30678866Oryza barthiiTriticum urartu2712.9685.1981forward
CNT30720193Oryza barthiiTriticum spelta2212.0987.8866forward
CNT30338878Oryza barthiiEragrostis tef22.338.5986.5767forward
CNT30370255Oryza barthiiOryza glumipatula10047.199.67300forward
CNT30101773Oryza barthiiOryza rufipogon10036.4199.33300forward
CNT30116717Oryza barthiiOryza nivara89.3332.699.63268forward
CNT30604129Oryza barthiiOryza punctata60.6729.0393.41182forward

Expression of CNT30576447

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGETETRNLI*

>peptide 2 (33 aa)
KPNTWDRSTSHAASNWILYNLYSHRNSTIISTS*

>peptide 3 (47 aa)
NRTHGIAVRRMQHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

Sequence

>CNT30576447
AAACCGAACACATGGGATCGCAGTACGTCGCATGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTATATCAACATCAT
AAACAGGGGGAATTAATCCATGGCGATCCGGCCATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAAGAAGGTGAGACA
GAGACGAGGAATTTAATTTAGATCTTGCCGCGTGGGCCGGGCGTCGGCGGCAGCTGCGGGCCCTTCTTGATCGGAAGCAGGAACTTGAGCAGGAGCCCCC