« Back to Oryza barthii search


Detailed information on CNT30576446


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007271, E-value = 2e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554827Oryza barthiiOryza glaberrima43.6584.6294.95495forward
CNT30108963Oryza barthiiOryza longistaminata23.3751.4692.08265forward
CNT30101890Oryza barthiiOryza rufipogon70.1990.2597.99796forward

Expression of CNT30576446

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLISEPLYIADVTIWSRSPGVAAHIYFYSSSES*

>peptide 2 (44 aa)
MINQCGFRVIDEVTAIFFLLKCNFIHVALFTYTKISVCNIFLLF*

>peptide 3 (71 aa)
MLHFSLIQKYRFAIFFCYSKLNCQPENQFCYSKLNGQRATLKQESTSPSVVDVAYCCLDTGFKQAHQAKTEQ

Sequence

>CNT30576446
ATTAACCAAGAAAAATGAACACATGGTCAGAGTAGTGTGGAAGGCAAAAGAATGTCAGCACCAAAATGTAGCTTGAAACCAAGTTGGTATGCTGTTGCAT
ACAAGTAGACAAACATTTCGCTCACAATGAAATACTGACAGGAAGTTGCACTATTGGCAAGTAAAAGGAAAATAATAGTGGCAATCCCCATTAAGGGCTT
GTTCGGTTGGGCCGTTCTCGGCCAGGATCGGAGCCCAATCCCCGTGGAAAATCCCGGCGTGGAAAGGATACCGGCCCACGCAAGTATAGGCGTTCGGTTA
AGCCCAGGCGAGATTTTATCCTGGCCCACCCCGGTGTTTTCCCCTCGTCATAGGCCGGGAAATATTCAGCTTCTCTGGTGGCGAGGAAAAAAATCCTCTC
GACGCAGCGACGCAACGAGAGGGGGCGCTGCAGCGGGGACGGCTGCACAGTGCAGCGCGACTCCGACGCGACGGCGACGGCGACGGCACGCTCTCTCCTC
CGGCAGTTGACTCCTCCGGTGGCCACCTTCTCCCCGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAA
GATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGTCCTGGTGTGGCAGCTCACAT
TTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTG
TCAAGTGACCTCAAGCTTTGTTTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAATTGATGAGGTTACTGCAATATTTTTTTTACTG
AAGTGTAATTTCATTCATGTTGCACTTTTCACTTATACAAAAATATCGGTTTGCAATATTTTTTTGCTATTCTAAACTAAACTGCCAACCTGAAAATCAA
TTTTGCTATTCTAAACTCAATGGACAGCGTGCAACGTTGAAGCAGGAAAGCACCAGTCCTTCTGTTGTTGATGTTGCCTATTGCTGCCTTGACACGGGAT
TTAAGCAGGCGCACCAAGCCAAAACCGAACAAAC