Detailed information on CNT30576437


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101686Oryza barthiiOryza rufipogon68.8662.3898.77325forward

Expression of CNT30576437

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQKRIDSYPKYFIRHIIEKILDGCNTYYESNQTLYLNS*

>peptide 2 (40 aa)
KLSTQTHPQTNTTPARSLAHPLPSYNNIVTLHAKTNRFIP*

Sequence

>CNT30576437
CCAAACTGAGCACACAAACACACCCACAAACAAACACCACCCCAGCTCGTTCATTAGCTCATCCCCTACCTAGCTACAACAACATAGTAACACTGCATGC
AAAAACGAATAGATTCATACCCTAAGTACTTCATCCGTCACATAATAGAAAAGATTTTGGATGGATGTAACACATACTACGAATCTAATCAGACTTTATA
TCTAAATTCGTAGTACTGAGATATGTCCCATTCATCCAAAATTCTTTATATTTCGGGACGAAGAGAGTAAAAGAGAGGATATATGTCACGACCGGCGGCG
GCGACAGCTGCTACGGCTGCCAGGCTGCCTTGCCGAGCAAGATGTTGACCCTCTCCGTGGGGTGGAAGGCGTCCCAGAAGATGTAGGTGTTCCTGTTCAG
GCACGGCCGCTGGAACGGCAGGCACGTGATCATCCCCCTGTTCCTCCCTATCCCACAGCACCCTCTGTCCAC