Detailed information on CNT30576430


BLAST search results

BLAST vs Swiss-Prot:
sp|P46518|LEA14_GOSHI, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693862Oryza barthiiOryza sativa29.5751.18100152forward
CNT30673194Oryza barthiiSetaria viridis22.1817.4387.72114forward
CNT30553850Oryza barthiiOryza glaberrima69.8438.85100359forward
CNT30368095Oryza barthiiSorghum bicolor10.8924.5687.556forward
CNT30101789Oryza barthiiOryza rufipogon99.6199.8199.8512forward
CNT30116388Oryza barthiiOryza nivara21.2131.14100109forward

Expression of CNT30576430

Peptides detected in this lncRNA

>peptide 1 (94 aa)
GTKRVPFSPTFTEQFGHANHKQSHIAHKQAKVQFSSLLLQPLGIEVIFQLLIQPCYTMQGKKNTGAEQLPLFARHITHTESSIDRSWLMRLEIR*

>peptide 2 (46 aa)
MLYYAGQEEHRCRAAAIIRETHHTYREFDRSELVDEIRDKIIRTCP*

Sequence

>CNT30576430
TGGCACAAAACGGGTACCATTTTCCCCAACGTTCACTGAACAATTCGGCCATGCCAATCACAAGCAATCCCACATAGCACATAAACAAGCAAAAGTTCAG
TTCTCTAGCTTATTATTGCAACCATTAGGAATAGAGGTAATTTTTCAGCTGCTCATACAGCCATGCTATACTATGCAGGGCAAGAAGAACACAGGTGCAG
AGCAGCTGCCATTATTCGCGAGACACATCACACATACAGAGAGTTCGATCGATCGGAGTTGGTTGATGAGATTAGAGATAAGATAATTAGAACATGTCCT
TGAGTGTGGGGAGCTTCATCTCGCCGCTGGTGGAGAGCGGGATGGTGAAGTTGCCGACGTCGAGCTGGTAGTCGATGTCCCAGTCCCGGCCCACGTCCTT
CACCAGCGAGATGAGGAAGTCGTAGGGGATCTTGGCCGGTATCTCCAGCTTCGTCGTGTCGCTCGCCGCGATCCACCCCGGATCGGGCATCGTGCCGGAC
GCCACAACGCTGAT