Detailed information on CNT30576428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693421Oryza barthiiOryza sativa99.2886.3897.46552forward
CNT30553781Oryza barthiiOryza glaberrima10094.5699.64556forward
CNT30104997Oryza barthiiOryza longistaminata67.0955.192.76373forward
CNT30101758Oryza barthiiOryza rufipogon93.5393.5397.5520forward

Expression of CNT30576428

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MYMNLAGIHGRSFRRRRIGRPAGGASHGRWPEVTTAVPNPFCFHVLLFQHSELTVTYSREGICDANYTIKPIVFQAN*

>peptide 2 (49 aa)
MSYCFNTLSLLSPTHVKAYVMQIILLNLLFFRPTELSSSSRLVGDISCA*

>peptide 3 (81 aa)
GGILAVAGGMATRRAENPPPPDPADRHPHIPPPPTRIHMQAHHIPWTMKNLHEAMFRLRETTTMINLQVDYNDSSKSSTCI*

>peptide 4 (48 aa)
PAASSPSLEAWRHGGLRIPHRRILRIDILTSLLRRREFICKHIISPGL*

Sequence

>CNT30576428
CCGGCGGCATCCTCGCCGTCGCTGGAGGCATGGCGACACGGCGGGCTGAGAATCCCCCACCGCCGGATCCTGCGGATCGACATCCTCACATCCCTCCTCC
GCCGACGAGAATTCATATGCAAGCACATCATATCCCCTGGACTATGAAGAATCTGCATGAAGCCATGTTCAGACTGAGAGAGACCACAACAATGATCAAT
CTGCAAGTAGACTACAACGACAGTAGTAAAAGCAGCACATGTATATGAATCTGGCCGGAATTCATGGCCGGTCATTTCGACGTCGACGGATCGGCCGGCC
GGCCGGCGGTGCATCACATGGACGGTGGCCGGAGGTAACGACGGCAGTGCCTAATCCCTTTTGCTTCCATGTCTTATTGTTTCAACACTCTGAGCTTACT
GTCACCTACTCACGTGAAGGCATATGTGATGCAAATTATACTATTAAACCTATTGTTTTTCAGGCCAACTGAATTGAGTAGTAGTAGTAGACTAGTAGGA
GATATTTCCTGTGCTTGAACGGTGATTGGTCCATGCTTGAAACGAATAAGTTCTTT