CANTATAdb - search

Detailed information on CNT30576376

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000983, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694650	Oryza barthii	Oryza sativa	44.1	64.08	95.32	1174	reverse complement
CNT30596363	Oryza barthii	Oryza meridionalis	37.94	99.51	95.35	1010	forward
CNT30371142	Oryza barthii	Oryza glumipatula	44.14	87.23	95.4	1175	reverse complement
CNT30109162	Oryza barthii	Oryza longistaminata	44.03	67.71	96.5	1172	reverse complement
CNT30102110	Oryza barthii	Oryza rufipogon	41.1	52.88	95.8	1094	reverse complement
CNT30118092	Oryza barthii	Oryza nivara	29.38	100.13	97.7	782	forward

Expression of CNT30576376

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MRSERNVISSERSSGVPGVFRENWMRDPTSSQPGFHKFTHTSRDNQDIYLRLGKYHICPARHIFASFARTYIRTTVQRYHIVN*

>peptide 2 (55 aa)
MRKVTVQGPTCQSFFFFFFSFFFLPFLSSSLFQREPREERGEGNRGGGAPVAGGR*

>peptide 3 (48 aa)
MAGTATTRAQLRRVKEVVMMAYRMAKGEGKLENWVRRREASMVARGFG*

>peptide 4 (31 aa)
MYALPAVHYLPLIISLVMASIRLLTIVAPVP*

Sequence

>CNT30576376
CGATGACTCAACTCTGCCGTTTTACTATAGAATTAAACCATCTAACTATACTAGACTTGAAGACTAGGTTTAAAGGGAACTAACTTATGTGATTGAACTC
CCAGCTTCGGCAAAAACTCCAAATAGACTCTAAAAAAGAGGGGTTGAAGCAAGGGTGAGTACAACGTACTCAGCAAGCTATTATATTATTCAACAATGAA
TGCATGAGAGGTAATATCCGTGTAGAGCTAGGTTTACTTGTAGAAAGCTGAGAATAAAGAAGTAGAAATCCTGAAATGCTTTATATGCAATAGTATTTAA
GAAAATCTTGAATTATATTTCTAACCAAAGTACCATATGAGTCTCGATGCTTAAATCCATGAGCACGGCTATTCGAATAGTTTTAAAGATATTCATACTG
CAGTAGATGTACGCTTTACCCGCAGTCCACTACTTGCCATTAATCATTAGCTTAGTCATGGCCAGTATTAGGTTATTAACAATTGTGGCACCTGTTCCAT
GAACTCTAGTCCCCATGCGCTCTGAACGTAACGTTATCAGCAGCGAGAGGAGTTCTGGCGTTCCCGGGGTTTTTAGAGAGAACTGGATGAGAGACCCCAC
GTCATCTCAACCAGGTTTTCATAAATTCACACACACATCGCGCGATAATCAAGATATTTACCTGCGCCTCGGTAAATATCACATTTGCCCTGCTCGGCAT
ATATTTGCCTCCTTCGCGAGGACTTACATAAGAACCACTGTACAGAGGTACCACATTGTTAATTAACATAATATCTAGGTCTGTCCCCATTCTAGAAGCT
GCGGTCGTACTCGTTCGTTTGACATAAGTACTTGGTAAACTTATATCGACCGAGACAGTACTAGCCACCCGGAAATCAACCAAATCTTGCGTACTGTCCC
AATCTAAGTTCATTATATTTTATGCAATCTAACTAGGCAGGGCTAAGCAAAAGCTAGCATATAACTGGTTTGCTATATGTTCAGATTATGCATTCAAAAT
CATGAATGGCTAATGCATAGAATAGAATGTAGAATATAGGATAATTATGCTCAAAGGAGAGGAACAATAACTTGCCTTGCTCCAACGCAAATAAATCCAA
CATAGGCAACCTAATTATTTGATTCTCGAAATACCATAGGTTGCCATCCAAAAGACAATAGACTCTACTGAGAAAGAGGAAGAACCAATTTCAATAAAAG
CCATAAAATGATAAGAAAACGATAAACGGCTAAAAGGGCTAGGGTTTAAGGTATAACCTATATCTTTTATAGGGTATATGGATTATGGGGCTAGTATTTG
CTAGCGGTAGGTTTAGGTAGTATAATACCTAGGGTTTAGTTGTATGGGAGTCGTTTGTGGAGTAGGATAGCATATCGGCTAGGCTCTATATTTTATGTGG
AGGCTCTCGTGGTTTGGACGATAGGAAATATACTAGATAGTTGATATGGTTAAATAGGTATGTGGCTAATATGGGTCAAGGTTAGCTTTGATAGAATATT
GGCTAGGATTTAGTTGTTTAGGCCGATATCGAGGTAGGATAAATATCGGCTAGGGTTTTAGGTGTTTGCTGGTCATCGCTAGAGTTGGGCAGCATGACGA
CTAGGTTTGGTATCATTTCTAGCCGTGTCGATAGACAGCATATCGGCTAGAAGAATAGGAGGTGGGTGCAGGTTTAGTGGGGCGGAAGTGTTACTCCGAC
AACCGTGAGTGGCGGTGGAGTGGCTAGGATCACACAGAGCTCAAGAGTTAACTGTGTGGCGTGCAATGGAGGTCAAGGGGATAGTGAAGCTCTGACCGAT
GTACGCATCAAGGCGTGGGGTGCCAGGAGCAGCACTTCGACCTTAGGTTTGGTTTTTGCCGGGCTTTACAACCAACGGTCCGACGTCGGGGTCCGTAGAC
CGTGCAAACGTCCCCATGGAAGGCGTAAAGTTCCAACCGGCGGCTTTTTAGTGGCTAAAAGACATTTTGGAAATAAAAGAAAATATTTGGAAAGCAAATA
TAAGTTTAAATTTTAAATTCAATTATAATATTAAATCGAATATTTATTCAAATGGTATTTGAATAAAGTAAGAAAATTCAAATAAAATCTTAAAATAGAA
AATTTTATATCAAAATGAATAGTTTGAATTTAGATGAATTTAGGTCCAAATTTGACTGGAATCGGATCTACGGTTTAGGAGATATGGGCTTCTAAAGAAT
AGGATTTGAATTAAATCTAGAAAATGAGAAAAGTCACTGTGCAGGGGCCCACCTGTCAGTCTTTCTTTTTCTTTTTCTTCTCCTTCTTCTTCCTCCCGTT
CCTTTCTTCTTCTCTGTTCCAGAGAGAGCCGAGAGAAGAGAGAGGAGAAGGCAATCGGGGCGGCGGCGCTCCGGTGGCTGGAGGGCGGTGACGTCAGCGT
CCACGCGTGTTCCCGAGCACGACGCACCCGGGGAGGGCGGTGTCTGGCGGAGAGAGCGAGGGAGATGGCCGGAACGGCGACGACAAGAGCTCAACTCCGG
CGAGTAAAAGAAGTGGTGATGATGGCTTATAGGATGGCTAAAGGAGAGGGGAAACTAGAAAATTGGGTTCGTCGGAGGGAGGCAAGTATGGTGGCGCGAG
GATTTGGTTAGTGTTGCTCCGGTAAAGGAGATTGGGCATGGCAAGATGGTGGCCGGCATGGG