Detailed information on CNT30576375


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000768, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693889Oryza barthiiOryza sativa90.35100.1197.231769forward
CNT30553887Oryza barthiiOryza glaberrima68.0836.8196.251333forward
CNT30371296Oryza barthiiOryza glumipatula9.754.685.26190reverse complement
CNT30109097Oryza barthiiOryza longistaminata18.9563.5394.61371forward
CNT3099695Oryza barthiiOryza rufipogon45.5145.2192.7891forward
CNT30116780Oryza barthiiOryza nivara6.2833.61100123forward

Expression of CNT30576375

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MQDVRCLVTITLHQVPEFLRMVLSREIPSRLPVWVGRWAYRRTYVSLYFPLRLNSFIWLVGLTTM*

>peptide 2 (34 aa)
MGIPKNICIFIFSAAFKLFYLAGRPNYYVRPMHR*

>peptide 3 (35 aa)
MLRKFPMVIYDMVIILYKWDIFTEELPLLFMKIGN*

>peptide 4 (46 aa)
MYDCMDVITMLWMRVLATDHGTGAVYAPGIREFNPRVPTALVSEPY*

>peptide 5 (47 aa)
MGYFYRGVAFVVYEDWKLKIMILDLGGKWCAYXSSCAPIGGVFAWVN*

>peptide 6 (38 aa)
MCHQLRLQCNHMCWFWGNLSLLCCLLLNLALGGRCSRD*

>peptide 7 (44 aa)
MGMVNNGDDLCPAWVKNKIVTCCHGGHKDGTMITLMLLLLLFIL*

>peptide 8 (73 aa)
MGTVVFAIWHGHLSISNITDSASLRERMCSPHGIRIRLGPTFPSSIGSWPMWRNTLRAHARLIFEQCSGFVIG*

>peptide 9 (78 aa)
STSTPKAEALNPLIHRERPRHRRAPRRPNRTPPLSPHHRAVASRTNRLLPLARVCRTKSYLRNQLSKASPIQFLLRSC*

>peptide 10 (32 aa)
MVLVQCMLQVFGNSIPGCRQPWYQSHTNCRKP*

Sequence

>CNT30576375
CTTCTACCTCCACTCCTAAAGCGGAAGCCCTAAACCCTCTGATTCACCGGGAACGGCCGCGCCACCGTCGCGCCCCGCGCCGGCCAAACAGAACGCCGCC
GCTGAGCCCACACCATCGAGCCGTCGCCTCGAGGACGAATCGATTGTTGCCGTTGGCGAGAGTGTGCAGGACCAAGAGTTATTTGAGGAACCAACTGAGC
AAGGCAAGTCCTATTCAATTCCTACTTCGATCATGTTGAATCCTATATCTTCGCAAATGCTTTATTATTTTATAAATTGCATGCGATGTTTTATAAAGAA
AATGGGGTATTGGTAGAAATAACCTAATTGCTACATTACCTACCTTGATATATTGATTATCGTTGAAGCCCTAGGCTGAGAATATGTGTGTGTTGTACAT
GCACAATGTGGGTATATTCGAGCTGCTATTATAGCTACTTGCTTAGCCATGCTTAGAAAATTTCCAATGGTTATATATGACATGGTAATCATTCTTTACA
AATGGGATATTTTTACAGAGGAGTTGCCTTTGTTGTTTATGAAGATTGGAAACTGAAAATAATGATTTTAGACTTGGGCGGCAAGTGGTGTGCATATNGT
AGTAGTTGCGCACCGATAGGGGGAGTGTTCGCCTGGGTCAATTAAGGACTGAACTATGTGTCACCAACTAAGATTACAGTGCAACCACATGTGTTGGTTT
TGGGGCAACCTTAGCTTATTATGTTGCTTATTGCTTAACCTTGCATTGGGAGGCCGTTGTAGTAGGGACTAGTCTGAGCGATGGTTCATCGGAGCTACCC
ATGTGACCCTCTATGGGAACGGTTGTGTTCGCCATATGGCATGGGCATCTGAGCATATCCAATATAACAGATAGTGCCTCGTTGAGGGAACGGATGTGTT
CGCCTCACGGCATTAGGATTAGGTTGGGGCCCACCTTTCCTAGCAGCATTGGTTCATGGCCAATGTGGAGAAACACTCTCCGTGCTCATGCAAGGTTAAT
CTTTGAGCAATGTAGTGGTTTCGTCATAGGCTAGCAAAACGGGTACCGGTTTGGTATCGCGTGGCATGGTTGACATGATTGCTAGCTCGTGTCATGTGGG
TAAAGTGCACAAACTCGGCAGAGTCTAAACTAATCGATTAGCCGTGTTCACGGTCATGAGTGACTTGGTGAAATGATACAAGTATAATGTTGGTGACTTT
TGTTAAGTAAATTCTGAAATGGGTATGGTGAATAATGGTGATGATTTATGCCCAGCATGGGTTAAGAATAAAATTGTTACTTGTTGCCATGGAGGGCACA
AGGATGGTACTATGATAACATTAATGTTACTATTATTGTTGTTTATCCTTTGATTTACAAAATTTCGTTGCAATCTACTATTATTTACTATTATGAAACA
AAATTTGCTTTATGCTGAAAATGAGCCACAAATATAGCCATCCTTGATCTCAGCTTGCAATAGTCCTAGGTTTCCCAAGGTTTGGGTAGGACTTGCCAAT
ACCTAGTGTATTGACCCACCTCTTATTGTTGTTTTTAGACTTGGATGCAGGATGTGAGGTGCCTAGTGACGATTACTTTGCACCAAGTACCGGAGTTTTT
GAGGATGGTTCTTTCTAGGGAGATTCCTAGTCGGTTGCCTGTGTGGGTTGGTAGATGGGCATACCGAAGAACATATGTATCTTTATATTTTCCGCTGCGT
TTAAACTCTTTTATTTGGCTGGTCGGCCTAACTACTATGTAAGACCTATGCACCGTTAAGTTATGAGAACCACTTATCTACTTATATGTCATGTATGATT
GTATGGATGTGATAACAATGTTGTGGATGCGTGTACTAGCCACTGATCATGGTACTGGTGCAGTGTATGCTCCAGGTATTCGGGAATTCAATCCCCGGGT
GCCGACAGCCTTGGTATCAGAGCCATACTAACTGTAGGAAGCCCTAGATAGAATGGTC