Detailed information on CNT30576369


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693516Oryza barthiiOryza sativa38.992.0999.57699forward
CNT30553784Oryza barthiiOryza glaberrima61.4977.8299.731105forward
CNT30108234Oryza barthiiOryza longistaminata25.7148.0793.94462forward
CNT30116872Oryza barthiiOryza nivara45.9187.9599.39825reverse complement

Expression of CNT30576369

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDPEVAATGGSSASGVWCSHEQIRQQQGL*

>peptide 2 (33 aa)
MFDCDVNLWLLCFLKNVYLFKASARIELSLYFF*

>peptide 3 (34 aa)
MEIRFFLNQRDRKIDSPHPCASDFFSSQLARILK*

>peptide 4 (37 aa)
MSLSRMDLGMVSGIEALPSELWQRAEFSTMMAARCCD*

>peptide 5 (55 aa)
MFLIRHRHAYYIVSRLSKSDIYMRFTTRTELELCSSVPLRPFIVYQHGGLLHPST*

>peptide 6 (80 aa)
MSLAEWVEEKTGFPHLHGSTFAHFLSPYSLPLPSPQSLLHEPPPPPPQPLISPYVVPPPSRWCLGMLPINNSLSSSAYCC*

Sequence

>CNT30576369
TAGCTACACCCTTTTTTTTCCTCCCAACCATCATGGAAGACCAAATCTTCGAGTCGGCACCAATGATAAGTTAAGGGAATAACTATACATTTTATAAATA
AATTTCTTTTAAAAATTTAACAAACACAAATATTACATTGTATTACATGATGTAAGTGTAAATGTAAGTACAATGTAATTTGTATGCAACTTTAAAAAAT
CCCATGGAAATACGGTTTTTTTTGAACCAGAGAGATCGCAAGATTGACTCTCCTCACCCATGTGCGAGTGATTTTTTTTCTTCCCAACTTGCACGAATCT
TGAAGTAAATCTAACGATTTAAAATTATGTGAAAATTGCATACAAGTTACAATATAATTACACTATAATTGTACTGTATTTAAATTTCATAAATTTTTAG
GAGAAAAAATATCAATAAATATATAGCAAAATCGTGAGTTATATGTGTCGGTTCTGAAAATTAAACGGAACCTATATTTCCACCCAAATATAGGTGCCGT
TTTTTTTTTCAATGGCTAGTACATTTGAAATAATCAAACGTGCATTTTTTTTAAAAACCGTCACCTATTAAGCAATGAGCCTAGCCGAGTGGGTGGAGGA
AAAAACCGGCTTCCCTCACCTCCACGGCTCTACGTTCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCACGAGCCA
CCACCGCCTCCGCCACAACCCCTCATCTCCCCCTACGTCGTGCCTCCTCCCTCTCGATGGTGCCTTGGCATGCTCCCAATCAATAATTCCTTGAGCTCGT
CGGCATACTGCTGTTAACGACCAGCATCAACAACTGCATGGATCCGGAGGTGGCAGCAACAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGAG
CAAATCCGGCAACAGCAAGGGCTCTAGCAGGCGGATCCAGCGGTGGGTGCTCTTGCGAGCACATCCGGCAGTAGCAAGGGCTCTAGCAGGCGGATCCAGC
GGTGGGTGCTCTCGCAGGCCGATCCAGTGGCGGCAAGGGCTCTCACGGCGGTGGCGGCGGGTGCCATCGTGGGCTGATCTGGTGGCAGCAAGGGCTCTAG
CAGGCGGATCCAGCGGCGGCAAGGGCTCTCGCGGCGGTGGGTGCTCTTGCGGGCAGATCCAGCAGTGACAATGACTTGTGGGCGGATCCAGCGATGTCGC
TCTCTCGCATGGACCTAGGGATGGTAAGCGGCATCGAAGCCCTCCCCAGCGAGCTATGGCAACGGGCGGAGTTCTCCACTATGATGGCGGCTAGGTGTTG
CGATTAGTGTATTGTGTGATTGATTCTATGATGATGTGCTTGTGTACTTCGGTTCTCGGATGTTGAGCGATGAATGTTCGATTGTGACGTGAACTTGTGG
CTTCTTTGTTTTTTAAAAAATGTTTATTTATTTAAAGCATCAGCTCGAATTGAGCTAAGCCTGTATTTTTTTTAATTGAGTCGTACAACTCATATAGGTA
TGTTCTTAATCCGACACCGACATGCTTACTATATCGTCTCTCGGTTAAGTAAATCCGATATCTATATGAGATTCACAACCAGAACTGAATTAGAGTTATG
TAGTAGTGTACCTCTAAGGCCCTTCATAGTGTACCAACATGGCGGGTTGCTTCACCCCTCCACATAGGCTGTTTGATGTTGTAGAGGAGAGAGGGTGTGG
GCCCTCGTTCCTTCGCTGAGGCTTTCGTCCCTTAACAAGGACGCGAGGAACTCGCTTGAAAAAGCTGAAACAAACACTTCAAAAAGCTAAAATAAAC