Detailed information on CNT30576353


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693744Oryza barthiiOryza sativa30.156.7998.85347forward
CNT30553632Oryza barthiiOryza glaberrima44.4148.8599.8512forward

Expression of CNT30576353

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNSARFRRFTGELEHRLPEQSIVSSSPPLIKRLCR*

>peptide 2 (47 aa)
MMMMMMMGQKYHPRMRTYRMFLHSAIVVALVQESGVHHGAKIWESSG*

>peptide 3 (81 aa)
DIFIQICSNLNQHSTCRISVNMPPASGCGFPVPIRCSFPVPGDVSSSYLPSFFWWASTHALLFHLNGRQRLRSFSHNGVIP*

>peptide 4 (63 aa)
MRTDPPEKNPANKKMTRRQEQGREHVSGQGSRIPSEQCAALTLALHCRALYFGQRKHPAHETHR

>peptide 5 (64 aa)
TYSFRYAQISINIPLVGYQLTCLQRADAASLSRYAVPFLFLATCHLLICRVFSGGPVRMRFSFT*

>peptide 6 (97 aa)
MRLPCPDTLFLSCSWRRVIFLFAEFFLVGQYACASLSLKWPSTSPFFFTQRRNPLIPSLPQQKASSLSMLLIYYYYNKIKIPHLDLDELRQIPPLYG*

Sequence

>CNT30576353
GGACATATTCATTCAGATATGCTCAAATCTCAATCAACATTCCACTTGTAGGATATCAGTTAACATGCCTCCAGCGAGCGGATGCGGCTTCCCTGTCCCG
ATACGCTGTTCCTTTCCTGTTCCTGGCGACGTGTCATCTTCTTATTTGCCGAGTTTTTTCTGGTGGGCCAGTACGCATGCGCTTCTCTTTCACTTAAATG
GCCGTCAACGTCTCCGTTCTTTTTCACACAACGGCGTAATCCCTTGATCCCTTCCCTCCCCCAACAGAAGGCATCGTCTCTCTCCATGCTGCTGATCTAC
TATTACTACAACAAAATAAAAATTCCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAG
TCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGC
ATCAAAGTGCATGAGCTTGGATCTAGAAGATCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCCTGTGA
CTTGATTTTGTTCAGATTTGATGATGATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGCATTCTGCAATTGT
GGTGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTGGTTAGTGTGGAGACGCAATCTGTGTAGATGAAAATAAAACA
ACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGCCATATTTTTGTTAGCGTTTAAATTGCGTTGTTT
CCAATTTAATTGTGATATTACAACATGGGACGATGACGCCGTTTAAGTGAAAGAGGAGCGCATGCGTACTGACCCACCAGAAAAAAACCCAGCGAATAAG
AAGATGACACGTCGCCAGGAACAGGGAAGGGAACATGTATCGGGACAGGGAAGCCGCATCCCCAGCGAGCAGTGCGCCGCGTTGACTCTTGCTTTGCATT
GCAGGGCCCTCTACTTTGGGCAGAGGAAACACCCGGCTCACGAAACACACCGT