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Detailed information on CNT30576334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693441Oryza barthiiOryza sativa89.81101.4498.4564forward
CNT30553834Oryza barthiiOryza glaberrima10092.7699.68628forward
CNT30596216Oryza barthiiOryza meridionalis98.7394.6697.9620forward
CNT30101916Oryza barthiiOryza rufipogon10091.6898.57628forward

Expression of CNT30576334

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTLPAQYRFPKWMARLLVSDFQDLISRTRNLIMTSKQ*

>peptide 2 (34 aa)
EIFFMYLKMKMIKYFFSLTLHFCFLSTYNQQNSW*

>peptide 3 (32 aa)
MQIGKKNESKKLGKSYNNLLPTSDHFKAPNLN*

Sequence

>CNT30576334
ATGAAATTTTCTTTATGTACCTCAAGATGAAAATGATAAAATACTTTTTTTCCTTAACATTGCACTTCTGCTTCCTATCTACATACAATCAACAGAACAG
TTGGTGATTCTTCTATGCAGATAGGGAAAAAAAATGAATCAAAGAAGTTGGGCAAAAGCTACAACAATCTACTTCCAACTAGTGATCATTTTAAAGCTCC
AAACTTGAACTGAAGCAGCAAAATGATTACCGGTTGCTTACATGGAGAATGAATTTCATTAAAAAATCTCAAATGCTCAACAATAGGTATTGTTGATCAA
CCGTGCCTTGCTGCTCAGACTTCCAGCCTTCCAGCCTTCCAGCCTTCCTGATCCAGTCAATCTTACAGAGGATTAACCACAGTTTGTGTTGCATTGGTTA
TCACCGGAGACCTTAGGACTTAAGCCTTGATGACATTACCAGCACAGTACCGATTTCCGAAATGGATGGCCAGGTTGCTGGTAAGTGATTTCCAGGATCT
TATCTCTAGAACTAGAAATCTCATCATGACATCGAAGCAATGAGATCCATACATGATGGGCCTTGTCCTCAGATCAACTGCCAAGCAATAATTGATTAAG
AACAGTTGCATTATTTTAACTCTTTACA