Detailed information on CNT30576329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002339, E-value = 3e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692736Oryza barthiiOryza sativa77.936.3696.35356forward
CNT30552880Oryza barthiiOryza glaberrima73.9610097.04338forward

Expression of CNT30576329

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLMVWRIRCSPGQAACGVESSAPFILFSAAYIFID*

>peptide 2 (46 aa)
FSKIEIYMLKISTCTVHACLCVVLVFCSFLFRFRRFRRVRFRRRRI*

>peptide 3 (50 aa)
MLVYVLFWCFALFCLDSDVSGESVFAGEEFEEFQGQQEEEFYSDADGVED*

Sequence

>CNT30576329
ATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGTTGTTTTGGTGTTTTGCTCTTTTCTGTTTAGATT
CCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGAGGAGGAGTTCTACAGTGATGCTGATGGTGTGGAGGA
TTAGGTGTAGCCCTGGTCAAGCTGCCTGTGGAGTGGAATCGTCTGCGCCGTTTATCTTATTTTCCGCTGCTTACATCTTTATTGATTGAGAGGAACTATC
TACCTCTGTAATGACATTTTATTCGCTTATTAATTAGAGTAATAATTGTACTCTATTATCAATTTGTTATTGTGTGCCTCGGCTGATTCCTGGACGAGGG
TTCGCGCACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAGGGGA