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Detailed information on CNT30576310


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553765Oryza barthiiOryza glaberrima29.8746.92100609forward
CNT30596278Oryza barthiiOryza meridionalis29.9249.1997.54610forward
CNT30101900Oryza barthiiOryza rufipogon31.6850.1698.45646forward

Expression of CNT30576310

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MKIPGLLDGSESNLHEFCFCRLKQHSSVKCLLQFQKHSGWYFDVVLETYLMIRLLRPLLASLLLQCSSYAQTPSVSLL*

>peptide 2 (61 aa)
LCLALHARPPIVVSSLPPSSSSIGGVRLPPSQLRFQMSPRRRIREKLTVRGCHDRLFCPAI*

>peptide 3 (47 aa)
RFASLCTHGHPSSSPVFPPLLPPLVVYACLRLSFVFRCLLVVESGRN*

>peptide 4 (53 aa)
ALPRSARTATHRRLQSSPLFFLHWWCTLASVSASFSDVSSSSNPGEINRAWLP*

>peptide 5 (48 aa)
MMLSENGLPLVRFGNFGRICASCNSTSTSKSILPSLGSKVTCPLVHLC*

Sequence

>CNT30576310
CGCTTTGCCTCGCTCTGCACGCACGGCCACCCATCGTCGTCTCCAGTCTTCCCCCCTCTTCTTCCTCCATTGGTGGTGTACGCTTGCCTCCGTCTCAGCT
TCGTTTTCAGATGTCTCCTCGTCGTCGAATCCGGGAGAAATTAACCGTGCGTGGTTGCCATGATCGATTGTTTTGTCCAGCAATTTGAGCGAACAGTAAA
GAATTACTGAGCCATGTCAGAGTGTGTTCTGAACTTCTTGTTGGAAGAGCAGCGAGGCGCTGTGGATGAGGATCGATTTTAATGATAAATCCATTATTAT
TGGCTTCGATTAATCCACTCGAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACACACGTCACCTGGAACAGCCTTTCCACATTCAAATTTGGGACA
ATTTGCAACTTCAGAGTTCAGACTTCATGCCATGGAGGAGAAACGTCCAGAGGTCATGAGATAATTATATAGAATCCGGCAGCAGTTTTTCGAGTTGAAA
AATTGAACTAGAAATTCCTGGAGAGGCCACATTTTACGTGAGAGTGAGACACGGCGGCGGCGGCAAACCCCGGCAGGCCGGCAAAGCGGCAGCGGCGGCG
AGGTCACCTACACCGTCCGATCGGATACGCGCGGTTCAGATTGGGAACAGTTGAGATTTTAGAGGGAACCAGGTTTATTATTGATGGGAATAATCACATT
TCATGCTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACGGTAACAACATTTACACTCATACGGGTACATCAGTTTGTGCATTTCTGCCCTGGGA
CGCTTCTGTCCAAGGCGCGCACCAAATACCTCATCAATTTCTTCCGTATTGTTCACTTATTCTGCTTAGAGCAGAAGTTTTCTCAGGAAGTCTTCGGAGA
TGCTATTCTAAAACCATCATCTCCACAGTACTGAGGAGACATGAAAATACCAGGTCTCCTCGACGGCTCTGAGAGTAATTTACATGAGTTTTGTTTCTGC
AGATTAAAGCAACATAGCTCGGTTAAGTGTTTGCTACAATTTCAGAAACACTCTGGATGGTATTTTGATGTAGTTCTTGAAACCTACCTTATGATTCGAT
TGCTGCGACCCTTACTGGCTTCATTACTTTTACAATGTTCCTCATATGCTCAAACCCCATCAGTATCACTCCTATGACATAAAGAAAGCTTAGTTGCAGC
TTGGCAAGTCTTGCAGAAATAAGAGCCCCGGTTTCTGATAAAGACGTAGCATAAGAAGTGTGCCTTGGAACATAGCCTTCGAAAGAGATTTCGGGGGTGT
TTGGCCTTTCTAAGCTCACCTGATGAATTCTCTGGCTGGGATGACCATTCCTCAGGTTTCATCATAGATTTTGTGGCTTTTATTAATTCCATTAGTGCAT
TGTTGACCTGCAATAGAGAAATACTCAGATGAGTCAACTTACAATTTCCTGCAACTCTGTAAGCGTGATGAAATAATGAGAGAAAAGAACAGCGATTTGG
AGAAGGTATAAGCCTTAAAATAACTCTGTAAGTTACATGTTTATGATTCCATCTCAGGTTTGGGATAACCATTTCATTGGTGCCTAAAAAGCAGTTTCAG
AGTTGGCCAAACAATTTTCTTCAAAAGTAGCATCTTCCCTTGTACAGTTTAGGTGGTGAATGATGCTTTCAGAGAACGGCCTGCCTTTAGTTCGGTTTGG
CAACTTTGGAAGAATTTGTGCAAGTTGCAACAGCACAAGCACAAGCAAAAGCATTCTTCCAAGTTTGGGCTCAAAAGTTACATGCCCATTAGTGCATCTA
TGTTAGAGTTTGATGCTTGCAGGGAACCATGATTTCTAATATTGCCTCGCTTGGTCAGCTATTTAGGAATATTTTCAGCATTCCAGCATAATTTCAGCTG
CCTAACAATATAGCATTTTGTCAAAGTCCATGCTTACCTCCTCTGGTCTTTCATGGCTTACTAGATGCGCACCATGAAGTTCGACCATTCTAGCAACAGG
AATAAGCCTTTCTGCAAGTCGTCTCGCATGACATAATTG