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Detailed information on CNT30576295


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552253Oryza barthiiOryza glaberrima55.422.0287.87272reverse complement
CNT30101796Oryza barthiiOryza rufipogon68.6410099.11337forward

Expression of CNT30576295

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCHLNTAEINVPVVLGRLSYWRRFIKLRWSYLVLCC*

>peptide 2 (51 aa)
MVLSRVVLLTTPHRSYMVLRRTACCRHIPSFGRQCTFLQNIESKVVKYTHTG

>peptide 3 (41 aa)
MKKRQHQLKVCILTTIIFRVNVARGQTYICAISTPLKLMYP*

Sequence

>CNT30576295
GGTTAGTGTGCTCGGCAAATTTCACAGGCCCTACTTCTGGTATGAACTGAGTACGCGATGATTCATGGTGCGTATTAGAGGCTTACCATAAGATAATGTC
GTGAATTCACCAAGCGTTCAAACCCACTGATGTGTTCTGTAAAGAAAAATATTTGTAAGTATTCATGAAGAAAAGGCAGCACCAGCTGAAGGTCTGCATC
CTGACAACGATAATCTTTCGGGTGAATGTCGCTCGCGGACAGACCTATATATGTGCCATCTCAACACCGCTGAAATTAATGTACCCGTAGTCTTGGGTCG
GTTGAGTTATTGGAGGCGGTTCATCAAGCTGCGATGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTACATGGTTCTCCGTAGGACAG
CGTGCTGCCGGCATATCCCATCATTTGGTCGGCAGTGTACATTCCTACAAAACATTGAATCCAAAGTTGTAAAGTATACACATACTGGAAC