Detailed information on CNT30576293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004863, E-value = 3e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553919Oryza barthiiOryza glaberrima10087.58100522forward
CNT30241489Oryza barthiiAvena sativa27.3921.7781.12143reverse complement
CNT3011843Oryza barthiiZea mays29.519.7285.06154reverse complement
CNT30689516Oryza barthiiTriticum urartu27.978.5682.88146reverse complement
CNT30345639Oryza barthiiEragrostis tef33.7224.2186.93176reverse complement
CNT30370198Oryza barthiiOryza glumipatula80.8487.1999.76422forward
CNT30434187Oryza barthiiPapaver somniferum23.9519.9482.4125reverse complement
CNT30643829Oryza barthiiCannabis sativa22.813.3182.35119reverse complement
CNT30319727Oryza barthiiAsparagus officinalis24.5214.8581.25128reverse complement
CNT30101726Oryza barthiiOryza rufipogon10091.4299.43522forward
CNT30496981Oryza barthiiDigitaria exilis34.4829.5687.78180reverse complement

Expression of CNT30576293

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNFQKIKTAIQLCSHHSVKNYSSLSSKHKHNLVSSHYCTKPSVIGSV*

>peptide 2 (68 aa)
MEPILNPVLRIPRWMSSQHPFSSCLQTYQWRPAAHLCLPPLSWCSNTRRGRKQTVLQPPQSSWSWVPGC

Sequence

>CNT30576293
TTGGGCTACTCAATAAAAAGGTGATTGATACATCATACAAGAGGGGGAATCTAACGTGATAATAGTCCCATAACATTGCTACACTTTTGTTGTCTTTTGC
ATACCCACAGACAAATAGAAACCTTCAAGTTACACAGGTCATCATACTGTTATATGAACTTTCAGAAAATTAAAACTGCAATCCAACTCTGCAGCCATCA
TTCAGTCAAAAATTATTCCAGCCTATCATCAAAGCATAAGCACAACCTAGTATCGAGCCATTATTGTACAAAACCAAGTGTCATCGGTTCAGTATAGAGG
GCTAGAGGCGGACATGGAGCCAATTCTAAACCCTGTTCTTAGGATCCCGCGGTGGATGAGTTCCCAGCATCCTTTTTCTTCATGTCTTCAAACTTATCAA
TGGCGACCTGCAGCTCATCTGTGCCTCCCACCGCTCTCATGGTGTAGTAATACACGCCGAGGACGAAAGCAGACAGTCCTCCAGCCACCACAAAGTTCTT
GGTCTTGGGTGCCAGGCTGCCG