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Detailed information on CNT30576279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000810, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693457Oryza barthiiOryza sativa86.4881.5898.26921forward
CNT30553849Oryza barthiiOryza glaberrima86.4880.9399.78921forward

Expression of CNT30576279

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MKMVTNRLSNHQILHRRLEGKRSPLRTKLGRWLHRVSRRTDGEERGPFEGAPKMSVAWTNWTSGGRTRSWPTDSSGQAKG*

>peptide 2 (58 aa)
MPELIGLDLLGFYHSAPRARATCQSGCPCNIPYDSWGYISVFRFPKEAKETEIEQSRFH

>peptide 3 (33 aa)
GRRLAPWTCKGEEVLLLVGVLAMARDRAAAAGI*

Sequence

>CNT30576279
GGGAGACGACTTGCTCCGTGGACTTGCAAAGGTGAAGAAGTACTACTACTAGTTGGCGTCTTGGCGATGGCCAGGGATCGAGCCGCTGCCGCTGGCATCT
GATGAGGAATCTCCCGGCAAATCCGCGGTCTCTGCAGCTTCCCGGCTAGAGTTCAGGCTCGCAGTCGTCGTGCTAGTGGCCTCGCCGCTCGCCGGCCGAT
CATACGCACGGCCGTCGGTCGGTTAGTTCGCTCGCCGCTCTCGATCGGGCTCTGTACGTCTTCGGATCTATACATGCTACTGCCCGTCCCGTATGAATTG
TACTGCTACGAATTTTAACGTGCCTTCTGGTTCTGGTTCAAGTCAGGGTTCCAAAATGCAGCCATAAACTCTCGGTTATCACAGGCTTCGATTATTTGGC
ATCCTGGTCCATTGTTATTGGCTCATATGGCTCCACATATCGTCGAGTGCCAATACAATGAAAATGGTAACAAATAGATTGTCAAATCATCAAATTTTAC
ATAGACGCTTAGAAGGAAAGAGAAGCCCCCTCCGTACAAAGCTCGGGAGGTGGCTCCACAGGGTCTCTCGGAGGACCGATGGGGAGGAGCGCGGCCCCTT
TGAGGGGGCTCCGAAGATGTCTGTAGCGTGGACTAACTGGACCTCCGGAGGCCGGACAAGATCGTGGCCAACGGATTCTAGTGGGCAGGCGAAGGGCTGA
GAAGAAAAGGCCGGAGACAACCTCTGAAGAGAATTAATGTGAGAAGACCCGACCTACCACAACGCATTCAATACCCCACCAACCAGCTGACACACTCCGC
CACAGGGCGCAGGTGGGGCGGATGATGAGGCAACTTTAGGGGCATGCATTAGCCTTACCGGTCACACACAGGATCCACGGGTTTCCGAATGCCTGAATTA
ATTGGGCTTGATCTCCTAGGTTTTTACCATTCTGCCCCAAGGGCTAGGGCCACCTGCCAGTCGGGGTGCCCTTGTAACATTCCATACGATTCATGGGGCT
ATATAAGTGTATTCCGCTTCCCGAAGGAGGCAAAAGAAACAGAAATAGAGCAATCTCGTTTTCAC