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Detailed information on CNT3057627


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06SE0|PSAA_STIHE, E-value = 5e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678731Amborella trichopodaSetaria viridis53.6288.3785.86304forward
CNT30617597Amborella trichopodaSesamum indicum57.1430.0390.12324forward
CNT30134105Amborella trichopodaLolium perenne33.1616.7393.09188forward

Expression of CNT3057627

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNPIAQTKCPNRTIHAQTDKPFVPKGLYPLISCEEFNHR*

Sequence

>CNT3057627
TCCACAGGTTTATCCCTCCATCGAATCAAATTAGCCAAAGGTGTGCGTTCATGAGCCCATGCTAGAGCTTCAATCAATTCATGCCAATATCCTTGCCAGG
AAATTAAAAACATGAATCCAATAGCCCAAACCAAATGCCCAAATAGGACCATCCACGCCCAGACAGATAAACCATTTGTACCGAAAGGGTTATATCCATT
GATAAGTTGTGAAGAGTTTAACCATAGATAATTCTTAACCATCCCATCAAATAAGTGGAAGATTCATTAAATTGTGAAGGATTACCCTGCCATAAAGTGA
TATGCTTCCAATGCCAATAAAAAGTAACCCATTCAATGGTATTTAACATCCAGAAAACCACCAAATAAAATGCATCCCAAGCCGAAATATCACAAGTACT
GCCTCGTCCTGAACCATCGCAAGGGAAACTATAACCAAAATCTTTCTTAGTTGGCATGAACTTGAAACCACATGGATCTAAAGCACCTTGTACTAAGATC
AATGTAGTTGTATGCAAACCTAGGGCAATAGCATGATGAGCCAAGAATTCTCCAAGACCTATTGTTT