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Detailed information on CNT30576261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370236Oryza barthiiOryza glumipatula88.1357.6799.55891forward
CNT30149046Oryza barthiiBrachypodium distachyon10.4835.6987.74106forward

Expression of CNT30576261

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RKIPIVFSLHMNTRCLKRTENQMVMWPLIYTYLAQV*

>peptide 2 (54 aa)
MIPPPNKKNFLLFSRILILTGKERKKELTAVTGWVLTMPPVRKPAAGRRRRAPT*

>peptide 3 (67 aa)
EEDTYRVQLTHEYKMLEKNRKPDGDVAFNLYLFSTGVNLLYLGVMNLLMYLCGLTGKYDQVTWSRLC*

Sequence

>CNT30576261
GAGGAAGATACCTATCGTGTTCAGCTTACACATGAATACAAGATGCTTGAAAAGAACAGAAAACCAGATGGTGATGTGGCCTTTAATTTATACTTATTTA
GCACAGGTGTGAACTTGTTATACTTAGGAGTGATGAATTTGCTTATGTATCTATGTGGACTAACCGGAAAGTACGATCAAGTGACTTGGTCTCGCCTATG
TTAGTCTTCAACTTGTATTTTTAAACCAGCTATTCCAATTCCCAAGGGTCAGTGTTGCTAACAGCGTGTTTAACTTGGCTAACTTGTACTAACTTTGTGA
TACATATGCTTTACAAACCAAGACTCTAGAGGGTTTTTGAGACTTCAGGCACTAAAGCAGAATACAAACCTGGAAGTTCATCAGAGTCACTAACAGCATA
ATGATTCATATCTTATACGACTTTGGTTGAAGCAATCGGCAGTTGTTATCCAAATAAGAAAACAAAACTATAGATTGAACTAGAATTCTCACAGTTCTGA
ATCACAAAACTGATTTAAAAAGGCTTGTAACTAATGGTTTTCAGCAAAGTCTTTTTTTTTTGGTAAACTGAACCAACTGAATCACAGGATTAAAAACCTG
ACAATCTTTGAAGTTCCTCAACAATTACTACTATAAAACCTTAAACCCACAGAAGTTTATCAGGTGAATTATTAGTAAATTAACCCAGCATCTCATCTGG
TCCCAAAAAAAGCTAACAAAAACAAATTTAGAAGTTGATGGCCACGGACAAATCGAGAGAACGACATGATTCCACCCCCAAATAAAAAAAATTTCCTCCT
CTTTTCACGGATCCTAATTTTGACAGGCAAAGAAAGAAAGAAAGAATTAACGGCGGTGACGGGTTGGGTGCTTACCATGCCGCCGGTGAGGAAGCCAGCA
GCTGGGCGGCGACGTAGAGCGCCGACCTGAACGCCGTGATGTGCCCCCGCGCCAGCAGCGCCACCGTCACCGCCGGGTTCAGGTGCCCGCCGGACACGTG
GAACCCCGCCG