Detailed information on CNT30576256


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Oryza barthiiMusa acuminata5.421.0486.9669forward
CNT30370044Oryza barthiiOryza glumipatula32.8127.8698.81419forward
CNT30604069Oryza barthiiOryza punctata30.5439.5586.92390forward

Expression of CNT30576256

Peptides detected in this lncRNA

>peptide 1 (44 aa)
IASPPSRRSSSSRRSLGAPPRLDWLGSRQSRSRPPWHLPPLRFP*

>peptide 2 (40 aa)
RLPPLAAVVVFASFSRSPPSLRLVRIAPIAVSSSMASAPP*

>peptide 3 (50 aa)
MAIPMIFLQVVQLLSQACCLPLPELLDMKTESRNAESRKLNYIRQEDYLN*

>peptide 4 (47 aa)
MTTTLGSWWPLAPRLASPIAAPVGCSPSRYACVDFDSVPPSDPPLFI*

>peptide 5 (34 aa)
MLALILILCRLATRLSSSRVQPSSRLLRVLWPYR*

Sequence

>CNT30576256
ATCGCCTCCCCCCCCTCGCGGCGGTCGTCGTCTTCGCGTCGTTCTCTCGGAGCCCCCCCTCGCTTAGATTGGTTAGGATCGCGCCAATCGCGGTCTCGTC
CTCCATGGCATCTGCCCCCCCTTAGATTTCCGTAGGAGGTAGCTAGCTAGCTTGCTGCCGCCCGTCGCATGACCACGACCCTCGGATCGTGGTGGCCGTT
GGCTCCCCGATTAGCTTCTCCCATTGCCGCTCCTGTAGGCTGTAGCCCCAGCCGATATGCTTGCGTTGATTTTGATTCTGTGCCGCCTAGCGACCCGCCT
CTCTTCATCTAGGGTTCAACCTTCGAGCCGGCTTCTCAGGGTTTTATGGCCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCT
GCCTCCCTTTGCCAGAACTATTGGATATGAAAACAGAGTCAAGAAATGCAGAATCCAGGAAACTCAATTACATTAGACAAGAAGACTATTTGAACTGAGG
AAGTTATTGTGTATGGTAAAAGAAGTAACAAGAGGCAAACAAAGAAATTTGTTGTAAACAAATAAGGGAAGTAGTATTATCTTTCCAGTTTGAAGACAGT
TTTTTTTTCCAGATAAGACGATGAGCTACCAACTCTATTGAATTTGGTACTCCATTATCAGTCCTCGTTTTGCGGGGTGTTACNCCNGTNNNGTAAAAAN
CTTGTTTGTCTAAGCAAAATGCTTCCAAGTCCCACCAAGCTAGATTAACTACAAAGTATCTGCAGAGTGCACAAGTCAGNTAAAAAACTTGTTTGTCTAA
ACAAAATGCTCCCAAGTCCCACCAAGCTAGATTAACTACAAAGTATCTGCAGAGTGCACAAGTCAGATCTGTCAGCTGTTACCGAAGCAAAAGGTTCAAT
GTGAACTTAAAGGATGCAGTACTGATCCTTTTAAGAGGATTTAACACAGATTTAACAGGGTGTTCTGTATGCGAGCTGTGATGGGATGGTTCTCTTCAGA
AGCATTTTATTTTAACTAAATTCAGAAGCATTTCGATGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGGAATTGGA
CCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGA
TGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGATTATTATCTGTGTGATCTACTGATCG