« Back to Oryza barthii search


Detailed information on CNT30576255


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 7e-37

BLAST vs NONCODE:
NONSTUT000620, E-value = 7e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693149Oryza barthiiOryza sativa31.19100.298.2499forward
CNT30676277Oryza barthiiSetaria viridis13.8176.2191.86221forward
CNT30523741Oryza barthiiSetaria italica13.8155.8191.86221forward
CNT30553477Oryza barthiiOryza glaberrima28.3197.4296.47453forward
CNT30369993Oryza barthiiOryza glumipatula23.5694.4996.29377forward
CNT30101348Oryza barthiiOryza rufipogon7970.2297.781264forward
CNT30498154Oryza barthiiDigitaria exilis14.9447.1490.38239forward
CNT30116557Oryza barthiiOryza nivara29.9495.6197.08479forward
CNT30604038Oryza barthiiOryza punctata45.3142.1887.86725forward

Expression of CNT30576255

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MLHHSTRSETTTEAQDKVQGGLLLDVVICKGATILKLLASEDEALLVWWNTLLVLDLGLHIVDRVRGLNLQGDGLASEGLNEYLHLEEARKDWN*

>peptide 2 (63 aa)
MRRCWSGGIPSLSWILAFTLSIVSEDSTSKVMVLPVRVLTNICIWKRQERIGINIGKKKAAGE*

>peptide 3 (45 aa)
MKSNAAPQHTLRDHHGGAGQGAGWTPSGCCNLQGCDHPQAACQRR*

>peptide 4 (38 aa)
MTDERHRYNEVQCCTTAHAQRPPRRRRTRCRVDSFWML*

Sequence

>CNT30576255
CTCATCTCGGATCAAACATCTCAGAAACATTAACAGAAGTAGAATGATAATATCATCGATTGGTACCGATGCACAGTGAAGCAAATTGTACTAGTATGGA
TAATAGTATCAACACAACTTAGGGACTCTAAACCAGAACACAACACAACCATGACACGATGATATGACAGACGAGCGGCATAGGTATAATGAAGTCCAAT
GCTGCACCACAGCACACGCTCAGAGACCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATC
CTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGAC
TCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCATCTGGAAGAGGCAAGAAAGGATTGGAATTAACATAGGTAAAAAAAAAG
CAGCTGGAGAATAAGTTGGCATCAGATCCTACGATATCGGTACTGTCAGCTCATAATAGATGAACATATCAATCACATCATACTACACTACAATTGGACA
GCATCATTAATCATAAGAGCTCTGCTCACAGCTCACACCACATCAACAAGCAACAACCAAAAATATCTTCAGATAATAACAAAACTGACATAAGTAACTA
CAGGACACGACAGATCTATGTAAGAACACAGAATAAAGCCACCTAGTTCTAGCATCTGACAGATTTGATTTGCACGAGTAAAGCAAATAAAACGGGTAAA
AAACACAGTACAACATCAGCACTACAGTTCAACTAGGCAAAGAGCCAGATACAATACAGATTAAATTGACCTTAGAACCCAAGCTCTACAGTTCAAGTAG
GTGTACACGATACAGATGTAATTCTCTAACCCAGCTCCACACAATTCCAATCCAAATCCAGGGGAAAAAAACTAAGAACACAATTCCAATCCAAATCCAG
NGGAAAAAAACTATGTGTTGCCTAACTCAACCTGAAGATTTTAACCTAACGAGCTATTCATCTATTGGAACAATATCAGAACAATCCCATCCGAACTAAG
CACAAATAAGTAAAACTAAATCTGATCACAAAACTCAAACTATGTGGCAGGATCAAAACATAACTGTGAACTACTCTTACTATCCATCATTAGGGTAATA
TATCGAAACAATCCCCATCTGACACATCATTAGGGTAATATATCGAAACAATCCCCATCTGACAGAACAATCTCAAAACCAATCCATCTATTAGATCGAT
ATAAATAACACAGATCCCTACCTCGATTCTCACGAAACCCAAAATCAATTTGAGAGATTAAGAGGATTACCCTAAAATCGCACGAAACCGTAACTCGATT
AAGAGGTGGATCACCCTAAAATCGCACGAAACCCTGAGAGATTGAGACTAACTCGCACGGGATCCTCCTACGCTTTCCACCACGAGCATCAAAATCGCGA
GATTAGACGGGCACCACGAGAGATTCGAGGATTAGGACGAGGTGATTGATTAGTTACCTTGACGAGGCGATTAGAGAACGCAAAGCTTCGCTTCCCCTCC