Detailed information on CNT30576251


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 7e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Oryza barthiiSetaria viridis33.8159.8196.3189reverse complement
CNT3088853Oryza barthiiVigna radiata34.3547.4194.79192reverse complement
CNT30511396Oryza barthiiSolanum lycopersicum33.9920.7793.68190forward
CNT3025537Oryza barthiiPopulus trichocarpa22.3631.3387.2125forward
CNT30149874Oryza barthiiBrachypodium distachyon37.5716.2998.1210forward
CNT30117202Oryza barthiiOryza nivara39.1811.7698.17219forward

Expression of CNT30576251

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSNPVSNTGNNISKRTFSRASRHAELPKFLYIQKRN*

>peptide 2 (51 aa)
MGDKLYRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSALYLK

Sequence

>CNT30576251
ATGAATAAATGGATAGAGCCTGGCTCCAATTCTGGTGAAACAAAAAGCAACGAGCTTAACTTCTTAATTGGAAGAACTCCCTGATCTAATTAGACGTTAA
AAATAAATTAGTGCCTGATATAGGGAAAGGCTGATTTTCCTATGAGTAACCCAGTATCGAATACTGGTAATAATATCAGCAAAAGAACGTTCTCCCGTGC
TTCCAGACACGCTGAGCTCCCCAAATTTTTGTACATTCAAAAAAGGAATTGATTCCGTAAAAGATGGGATCAACCAGTAAATAGAAAATTACTGATATTT
CATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGAGTATAACGAATTAGATATGACCCAAAAATAACATGGGCCAAGGTCGGCCAGTGAGA
CGATGGGGGATAAGCTTTATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAG
ACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTTATATCTCAAGG