Detailed information on CNT30576243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004101, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553379Oryza barthiiOryza glaberrima52.7393.1796.34764forward
CNT30101412Oryza barthiiOryza rufipogon46.79100.7495.87678forward

Expression of CNT30576243

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRISYPVPEERLRAQYLHVCRASRLIIGVYVDNLISTGCSSKKINVFKAQMKQVFLMI*

>peptide 2 (52 aa)
MRTELHCAYKMLIVHGIILREVSEILYYISLALYWITTWWHISIGNLQMLYL*

>peptide 3 (50 aa)
MNILQFEDTFQCFHQINIDIFLFLQYGGEYTHVSSTGIFSKSICSSEYNR*

>peptide 4 (48 aa)
MFLVLAYFPKVSAHQNIIGNHYKQNGGKTYTILSLTSSMNFSCHTLAS*

>peptide 5 (39 aa)
MPASACLLFQFFLPGCESPIPSPRSDSEHSIYTCAELRG*

Sequence

>CNT30576243
GTGACATCTTGTTAGTGGATGATGATATGACATCTTTGCATGTTAAGCTTAAGGAATTAGTGGGGGATAACTTTATAGTAAGATAGGATTCAAGATAGAT
CGATTGTGAAAGTTGATGGGGGTAAAGAGCATGATACCCAAAAATCTTTATCTTTAAAATTCTGTTTTTGAAATTCCTAATTTGATTTTAAGGTGTAAAT
AGATTTTTATTTCCAACAAATATCTTAAATTAACTTCCAATAATAAAAAGTGAACCCACACTGAACTACCAACATATAATAAAGAAAATCGCTTTGTCCA
TCCCCTCCCACGCGCGCGATCTCTCCACTTGTCGCCATCTCCTTTTGCTATAAGGAAATTAGAAGCGAGAGTGTCTCCCGACCGACTTGTAGAGAGCGAA
GGAAATTGGAAGTGAGAGTGTCTCCCGACTTGTGGAGAGCGAGTAAGGAGGAGAATGAGATTCTAATTTTTGGATACATCTCTATGGAACTGTTGGAGCA
AATCTTTTATAAAATAAATTTTAATTTTAAAATTGGGTTTCATTTAAGGATATTGTTGTGATGCTCTAAGATCAAGATTGACTTACCTTGTTGTTTTTTA
GTCGTAGCAGTGGCAACACCACGCGTCCACCTTCCTCCCTCCGCCATCGTCGCCGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGCCTGCGT
CTGCCTGCCTCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCTCCTATCCCGTCCCCGAGGAGCGACTCAGAGCACAGTATCTACACGTGTGCCGAGCT
TCGCGGTTGATCATCGGCGTGTACGTTGACAATCTCATCAGCACCGGCTGCAGCAGCAAAAAAATCAACGTGTTCAAGGCTCAAATGAAGCAGGTATTCC
TCATGATCTGAGTGACCTTGTTGGCCTCTTATCTTACTATATATCTGGGCATCGAGATCACCCAGGATGCGAACGGAATTACACTGTGCATACAAAATGT
TAATAGTACATGGCATCATCCTAAGGGAAGTTTCGGAAATATTGTACTACATTAGTCTGGCACTTTATTGGATTACTACGTGGTGGCATATTTCAATAGG
CAATTTACAAATGCTATATCTCTAATTCAAGCACTAAGTAATGGCATATATCATACATGAACATCCTTCAATTTGAGGATACATTTCAGTGCTTCCATCA
AATAAACATAGACATATTTCTTTTTCTCCAGTACGGTGGAGAATATACACATGTTTCTAGTACTGGCATATTTTCCAAAAGTATCTGCTCATCAGAATAT
AATAGGTAATCATTACAAACAGAACGGGGGGAAAACATACACCATACTAAGCTTGACTTCCTCTATGAATTTCTCCTGCCACACGTTAGCATCATAAATT
ATTCCGAAATATAGTGAAATACAAGTATTTATGAACTATTATATTGAAC