Detailed information on CNT30576241


BLAST search results

BLAST vs Swiss-Prot:
sp|P43286|PIP21_ARATH, E-value = 4e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza barthiiOryza sativa57.3259.65100380forward
CNT30180948Oryza barthiiSecale cereale22.177.1784.35147forward
CNT30289517Oryza barthiiTriticum aestivum41.1849.3789.38273forward
CNT30221191Oryza barthiiHordeum vulgare8.927.8393.2259forward
CNT30387764Oryza barthiiTriticum turgidum41.1830.7889.38273forward
CNT30569510Oryza barthiiActinidia chinensis9.9531.7392.4266forward
CNT30592144Oryza barthiiMusa acuminata9.3526.9695.1662forward
CNT30553402Oryza barthiiOryza glaberrima57.3272.66100380forward
CNT30436608Oryza barthiiAegilops tauschii49.1745.3488.96326forward
CNT30254684Oryza barthiiAvena sativa10.863293.0672forward
CNT30657898Oryza barthiiTriticum dicoccoides41.1837.3588.64273forward
CNT30228928Oryza barthiiAnanas comosus15.8426.9292.38105forward
CNT30653715Oryza barthiiRosa chinensis20.3623.1685.93135forward
CNT30214941Oryza barthiiHelianthus annuus11.6130.284.4277forward
CNT30680357Oryza barthiiTriticum urartu22.9353.5287.5152forward
CNT30596194Oryza barthiiOryza meridionalis56.8686.6799.2377forward
CNT30370054Oryza barthiiOryza glumipatula57.3272.6699.21380forward
CNT30109688Oryza barthiiOryza longistaminata55.6669.62100369forward
CNT30331328Oryza barthiiDioscorea rotundata41.1853.2281.32273forward
CNT30101372Oryza barthiiOryza rufipogon57.3250.4100380forward
CNT30116534Oryza barthiiOryza nivara57.3287.96100380forward
CNT30604398Oryza barthiiOryza punctata22.326.2685.81148forward
CNT30113851Oryza barthiiFicus carica9.3522.3896.7762forward

Expression of CNT30576241

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MEKKTGPGTREEKERCVWACAIEALLVFTTWSRLACLLLLLPLLLHD*

>peptide 2 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 3 (51 aa)
PGRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 4 (58 aa)
RDVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

Sequence

>CNT30576241
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGC
CGAGGGTGCCGACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAA
CTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGC
TCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTAC
CTCTCTCTTCTCTGATGGATGTGGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAAACCGGCCCA
GGTACAAGAGAAGAGAAGGAAAGGTGTGTGTGGGCTTGTGCCATCGAAGCACTTCTTGTCTTTACAACCTGGAGTAGATTAGCTTGCTTGCTGTTGCTGT
TGCCGTTGCTTCTCCATGATTAGAAGCCAAACTTAGCACTTGATAATGATCATGTTAGTGATG