Detailed information on CNT30576232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001339, E-value = 4e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381505Oryza barthiiManihot esculenta48.8263.9289.78186forward
CNT30403504Oryza barthiiBeta vulgaris46.7280.5493.82178reverse complement
CNT3087623Oryza barthiiVigna radiata50.9293.2792.27194reverse complement
CNT30612440Oryza barthiiArabis alpina60.89103.1191.38232forward
CNT30141326Oryza barthiiLolium perenne43.3149.798.79165forward
CNT30483432Oryza barthiiChara braunii38.5872.0689.12147forward

Expression of CNT30576232

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSRRLIGSGLVKGTEPTGXVAKASLHRAIVTAYGPEPG*

Sequence

>CNT30576232
GACATTGAACCTCCAGTGGGTAGTGAAATATAACGTGAAACCGTGCTGAGCTCCCAAGTAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAA
GAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCNGTAGCGAAAGCGAGTCTTCATAGGGCGATTGTCACTGCTTA
TGGACCCGAACCTGGGTGATCTATACATGACCTGGATGAAGCTTGGATGAAACTAAGCANAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGT
TGTGGTTAGGGGTGAAATGCCACTCGAACCCCGCCGAGCACCACACCGCCGCGCGCCGCATGCAAGGACACGCCCCTGCCG