Detailed information on CNT30576227


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SPE5|SNAG_ARATH, E-value = 6e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108407Oryza barthiiOryza longistaminata94.6678.9699.37319forward
CNT30151494Oryza barthiiBrachypodium distachyon77.7416.4391.22262forward
CNT30101481Oryza barthiiOryza rufipogon94.9689.89100320forward
CNT30603976Oryza barthiiOryza punctata75.6710098.82255forward
CNT30336357Oryza barthiiCynara cardunculus29.6723.8784100forward

Expression of CNT30576227

Peptides detected in this lncRNA

>peptide 1 (47 aa)
WHPLQEHQRQVVLFHIHDRILMLCDKNLKLHSSVQALSLKHQQIPCV*

>peptide 2 (33 aa)
MCLAASQGEEIISCPFEAFSKASFAFSFSFLNL*

Sequence

>CNT30576227
CCTGGCACCCTTTGCAAGAGCATCAGAGGCAGGTTGTGCTCTTCCACATTCACGATAGAATTCTGATGCTCTGCGATAAAAATCTGAAACTTCATTCCAG
CGTCCAAGCTCTTTCGCTAAAGCACCAGCAGATTCCATGTGTTTAGCAGCATCCCAGGGTGAAGAAATCATTTCCTGTCCTTTTGAAGCCTTCTCAAAGG
CATCCTTTGCTTTCTCATTCTCCTTTTTGAACCTATAAGCAATAGCTTTAAAGTAGATATGAAAGTTCTGTCATATACACCACAGGGAAGCAAATTGACA
GAAAGAAAATAGAACATGGCAAAAAAAGTAACGGACC