CANTATAdb - search

Detailed information on CNT30576205

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004848, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672538	Oryza barthii	Setaria viridis	20.65	42.59	90.2	204	forward
CNT30545912	Oryza barthii	Ipomoea triloba	4.45	20	95.45	44	forward
CNT30248540	Oryza barthii	Avena sativa	18.42	30.95	88.46	182	forward
CNT30464486	Oryza barthii	Saccharum spontaneum	19.43	26.12	85.94	192	forward
CNT30101510	Oryza barthii	Oryza rufipogon	91.3	86.48	99.22	902	forward
CNT30116418	Oryza barthii	Oryza nivara	48.08	45.67	98.53	475	forward

Expression of CNT30576205

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPRWTGRRSRGGRSRSAGRRRGRGTRRCRSRGRRACWGCGR*

>peptide 2 (30 aa)
MYSNIRRANPSSTNRKKQKNPSVHTGSGAG*

>peptide 3 (70 aa)
MRARTPRVTRREMRMLQRQLKRPHARHLHGQHRHDTARLAEPIAASYLVAPLPRSATEREREREREREGN*

>peptide 4 (57 aa)
MRSGTNHRNQNQTLQSVRWNAGALGADAGTVMGQLILALGPGTLKAGESLVDASVDW*

Sequence

>CNT30576205
TCAACCAAGGAATCATAATAGATGTCACTCATAGAAGTAATAGGTGAACCTGAATAAAATCTCTGAATGTATCAACCAACATATAGTCATATATGATCTG
AACAGCAGTAAGTAAGCCGTACCCAAAAGAAAGGGGAAAAAACTAAGAACAAGACATGGATCGATAATATGTGCATGACAAGCGCTAGCTACAAGGGCTA
GAAGATATGTAACCACCTAAACCACAGCGATGTACAGCAACATCCGGCGAGCTAATCCCTCGTCAACAAATCGAAAGAAACAAAAGAATCCATCCGTCCA
TACTGGAAGCGGTGCTGGCTAATAGTAATCCCCAAATGCGAAGCGGAACCAACCATCGAAATCAGAACCAGACTTTGCAGTCGGTGCGCTGGAATGCGGG
GGCGTTGGGGGCGGACGCTGGGACGGTGATGGGGCAGCTGATCTTGGCCTTGGGTCCTGGAACCTTGAAGGCGGGGGAGAGCTTGGTGGATGCCTCGGTG
GACTGGTAGAAGGAGTCGAGGGGGGCGTAGCCGAAGCGCTGGCCGTCGAAGAGGGCGAGGGACTCGACGTTGTCGTAGTAGAGGCCGACGCGCTTGTTGG
GGTTGCGGACGGTGAGGTCGACGGTGAGGCTGTAGGCGAGGGCGGAGTTGGTGGAGAGGGTGAACTGGGTGAGGGCGGCGGAGTCGACGGTGGCGGCGAT
CATGTGGGGGCGGAAGATGAGGTAGAAGATGAGGGCGAGGACGCCGAGGGTGACGAGGAGGGAGATGAGGATGCTGCAGAGGCAGCTGAAGAGGCCGCAC
GCCAGGCACTTGCACGGGCAGCACAGGCACGACACCGCGCGGCTCGCCGAACCCATCGCCGCCTCCTACCTTGTTGCCCCCTTGCCGAGATCTGCGACGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAATTGAACAACAAGTGGAGGAGGAGGAGACGATGCGGGTTTGTGGTTTGTGTA