Detailed information on CNT30576176


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289785Oryza barthiiTriticum aestivum44.3140.3397.97148forward
CNT30436129Oryza barthiiAegilops tauschii32.3434.1899.07108forward
CNT30366141Oryza barthiiSorghum bicolor30.2414.5794.06101forward
CNT30101296Oryza barthiiOryza rufipogon67.9639.4899.12227forward
CNT30116652Oryza barthiiOryza nivara10094.0899.7334forward

Expression of CNT30576176

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LFTHAPIRTLIRGRQWLAGELANATPRYCDRVRRRLTARTL*

>peptide 2 (47 aa)
IIHSCTDTYTNSRETVASRRASKCNTPILRPCATTTDGEDAIVDSNT*

Sequence

>CNT30576176
ATTATTCACTCATGCACCGATACGTACACTAATTCGCGGGAGACAGTGGCTAGCCGGAGAGCTAGCAAATGCAACACCCCGATACTGCGACCGTGTGCGA
CGACGACTGACGGCGAGGACGCTATAGTGGACTCTAACACATAAGCCACGCACCCGCACGGCGGCGCTCGATCTGGCTGTCTGGCTAGTTCTTGAGGAGG
TAGTCGTCGAGGTCGTGGAAGTTCTTGTAGAAGCTGACCAGCTCGCCGTCCACCACGCTGTACGACACCACCTTCTTCTCGTCGTCCGCCACCTCCACCT
TCTCCTTCGCGAACGTCACCATCGGCACCCCTTC