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Detailed information on CNT30576173


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002509, E-value = 5e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695565Oryza barthiiOryza sativa59.5536.9494.08321forward

Expression of CNT30576173

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIGVRFRSRSXSPVDCLWHVNWALVLFCLPLLFL*

>peptide 2 (82 aa)
HLAITLSPPLEITIVRLPGRSWRLEGVEEEPCCRRRHGGSRVAAGHQETPSSTLRRRRLPLSCTASSSTSPRFAVSPSRAEC*

>peptide 3 (88 aa)
TPCDHPLTTTRDHHCEAPRPELEVGGSGGRAVLPPSPWGKPGSRWTSRNAVEHLTSPPSAPVLHRVELHFTAFRRLAVSRRVLKRSPC*

Sequence

>CNT30576173
ACACCTTGCGATCACCCTCTCACCACCACTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCTGGAGGTTGGAGGGAGTGGAGGAAGAGCCGTGCTGC
CGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTGGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCCGCCGTCTGCCCCTGTCCTGCACCGCGTCGA
GCTCCACTTCACCGCGTTTCGCCGTCTCGCCGTCTCGCGCAGAGTGTTGAAGAGAAGCCCTTGTTAGTANGCTTGCGTACCTAACAAGATGATCGGAGTG
CGGTTCCGTTCTAGGTCTCNTTCCCCAGTCGACTGCTTGTGGCATGTCAACTGGGCCCTTGTATTATTTTGTCTTCCGCTGTTGTTTCTCTGATAGTTGT
TGGCCTGCNTNGCCCTAATGTAAGNATTTAACTCTCTTAGCCTGAATTCATTCGTGATATGTTGTGATTCGGCTATGTATGTGTGTACCAACTACTGATC
TAGGGATTGGTACTGATAAACACAGAAGATTTCCGATTT