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Detailed information on CNT30576162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692482Oryza barthiiOryza sativa33.4519.9283.16196forward
CNT30553475Oryza barthiiOryza glaberrima74.7446.01100438forward
CNT3099742Oryza barthiiOryza rufipogon64.5170.1398.15378forward

Expression of CNT30576162

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MADNHISLEEVAKYGSVITKEFRSEAEGYKFYNDFPFVDIFLKTRCIFRVTKR*

>peptide 2 (96 aa)
HHLLILFAASIALIHQTERAAAPPLHQSPSAPPVPLPRRPSTGAPKSPRRPPPLPSTLVIKVRRRQTTQPLALHCPSPVPSLSPAGHLAAPRRDSR*

Sequence

>CNT30576162
CCCACCATCTGTTGATTCTGTTCGCCGCCTCCATCGCCCTCATCCACCAAACTGAGCGCGCCGCCGCGCCGCCCCTCCACCAGAGCCCGAGCGCTCCGCC
GGTGCCGCTGCCACGCCGTCCCTCCACCGGAGCGCCGAAAAGCCCTCGTCGTCCCCCTCCACTGCCGTCCACCTTAGTCATCAAGGTCCGGCGCCGACAA
ACCACGCAGCCCCTGGCGCTTCATTGCCCCTCGCCGGTCCCTTCGCTTTCCCCCGCCGGACACCTCGCTGCCCCACGCCGGGATTCTCGATGATCTCCCC
AACGGCCGCCTGCCCTCGTTTTGCATGGAGTCGCCGACCCTCGTCTGATTTGGAATCGTAGTCGTTGCCACCTCTCTATTTTTATTCAGAAATTTGGAAT
GGCTGACAATCACATTAGTTTGGAGGAGGTTGCAAAGTATGGAAGTGTGATAACCAAGGAGTTTAGAAGCGAGGCAGAAGGATATAAGTTCTATAATGAT
TTTCCCTTTGTTGATATATTCTTGAAAACTAGATGTATCTTTAGAGTTACAAAAAGGTGAGACTTCTTGTGATTTTGTTATTACTG