Detailed information on CNT30576149


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693167Oryza barthiiOryza sativa86.5395.5100424forward
CNT30674846Oryza barthiiSetaria viridis34.933.488.89171forward
CNT30222634Oryza barthiiHordeum vulgare18.7829.1188.0492forward
CNT30456759Oryza barthiiSaccharum spontaneum23.0624.1591.15113forward
CNT304942Oryza barthiiZea mays23.6732.7790.52116forward
CNT30596071Oryza barthiiOryza meridionalis67.1486.5894.53329forward
CNT30101341Oryza barthiiOryza rufipogon90.41100100443forward
CNT30604008Oryza barthiiOryza punctata5071.6497.14245forward

Expression of CNT30576149

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MRGGLGSLVVVVVGDELAGSGVDGGEEEEEDVEEEERLDLVDGDAGLDVELRQDALAGDRLAEEGRREPQHGHPPHEQLVLLGEPDA

>peptide 2 (64 aa)
MAAKKKKRMLKRRSGSISLMGTPVSMLSCARMPLPVTASPRRDAANPSMATLPTNSSFSLVNPMP

Sequence

>CNT30576149
TAAGCATTAACATCCAACAGAGTCGAGAATTTGGAAGGTTCACCCATCATGCATTCAGGAGTACCGATTGATTGTTGTGTCCTGAATTTTTGCTAGTATA
TGCATATAAGTAGATACTACTCCACTACAGTACAGAGGAGAGGATTGACATTGACTAGCTAGTCCACTTAACCGTCTCCTTACTACTATCAGAAGAAGCT
AATTTAATTAAGTGGAGTAAAAGCAAAATGAGGGGTGGGCTGGGCTCATTGGTCGTCGTTGTCGTCGGTGACGAACTTGCCGGTTCCGGGGTTGATGGCG
GCGAAGAAGAAGAAGAGGATGTTGAAGAGGAGGAGCGGCTCGATCTCGTTGATGGGGACGCCGGTCTCGATGTTGAGCTGCGCCAGGATGCCCTTGCCGG
TGACCGCCTCGCCGAGGAGGGACGCCGCGAACCCCAGCATGGCCACCCTCCCCACGAACAGCTCGTTCTCCTTGGTGAACCCGATGCCGC