Detailed information on CNT30576146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004101, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553440Oryza barthiiOryza glaberrima78.598.997.781081forward
CNT30101501Oryza barthiiOryza rufipogon91.2195.1598.891256forward
CNT30116641Oryza barthiiOryza nivara28.6978.5399.24395forward
CNT30604007Oryza barthiiOryza punctata74.877.185.531030forward

Expression of CNT30576146

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQYFLRYHCFIWIILPSTNINIFFNSIYFPMCYNL*

>peptide 2 (41 aa)
MVLPFTISNFPVTIFQLSCAHFSPQILYAFFNVFMLTAVMY*

>peptide 3 (44 aa)
MHLSKSFILYVQSWISLVKLHLMNVGRMVIHGIIIMTSSTLQFN*

>peptide 4 (51 aa)
MSLLSAILLDVQFVQCQWVPLLVVLCTHEPTDKTPILRGGELEGGWMVGGD*

>peptide 5 (50 aa)
MPASACLLFQFFLPGCESPIPSPIWICMYTRELREIRIACTKFTEITAVS*

>peptide 6 (89 aa)
MMLTLSDCSSTSMVCFTHRETTIFFLYIYMNILNEFINNEYIILLIGFDNKEYTVACFATCNSLPFHHMDLKDQQIIYLPACNIYYHRA*

>peptide 7 (67 aa)
GNTTRPPSSLRHRRRLSSCRASTAVNHACVCLPPLPIFPPRMRISYPVPDLDLYVYTRAAGDPDRMH*

>peptide 8 (36 aa)
MKSYAIFSSLSLFHLDHTTKYQHQYFLQFHLFSNVL*

>peptide 9 (38 aa)
MCSLYSVNGFLCLLYCVLMNQQTKHQYSGEGNWKGVGW*

Sequence

>CNT30576146
GTGGCAACACCACGCGTCCACCTTCCTCCCTCCGCCATCGTCGCCGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGCCTGCGTCTGCCTGCC
TCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCTCCTATCCCGTCCCCGATCTGGATCTGTATGTATACACGCGAGCTGCGGGAGATCCGGATCGCATG
CACTAAATTCACTGAAATCACCGCAGTGAGTTAAGTATATACTCCACCTAATAACGAAATGCACTTGAGTAAATCGTTCATTTTGTATGTACAGTCCTGG
ATTTCTCTTGTTAAGCTCCATCTTATGAATGTTGGTAGAATGGTGATCCATGGGATAATTATTATGACAAGCTCTACTTTACAGTTCAACTAGACCATCA
ATTTGTTTCCTGAAATTTTATCTGAGCAATGCCACTGCTTGTTCTGTTCTTTCTCCAACACACTTTTGTGCAAAGTTAATCACCTTAAGAAAAGACCATT
AAAAGTGTTAACGATGAAATCCTATGCAATATTTTCTTCGTTATCACTGTTTCATTTGGATCATACTACCAAGTACCAACATCAATATTTTCTTCAATTC
CATTTATTTTCCAATGTGTTATAACCTATAACACCTTCTGGCAAAACACTATCTTTCATAAAGTCTAAGGACGCATGATGCTAACTCTATCAGATTGCTC
ATCTACTTCTATGGTGTGCTTCACACACAGAGAGACGACTATTTTTTTTTTGTATATCTATATGAATATCTTGAATGAATTCATTAATAATGAATATATC
ATTCTGTTAATAGGTTTTGATAATAAAGAGTATACTGTAGCTTGCTTTGCAACTTGCAATTCATTGCCATTCCACCACATGGACTTAAAAGATCAGCAAA
TAATATATCTCCCTGCTTGTAACATATATTATCATAGGGCATGAACTGAAGTAAATATACACTGTTTCGAGCTGCTAGCCTACTACCAAACAGTACAAGT
ATATAACAAATAGTCATGGTCTTACCATTCACTATTAGTAATTTTCCTGTTACCATATTTCAGCTTTCTTGTGCACATTTTAGCCCCCAAATCTTGTATG
CTTTTTTTAATGTTTTTATGCTTACTGCTGTGATGTATTAACATCCAAAATGTCTCTTCTTAGTGCCATTCTTTTGGATGTGCAGTTTGTACAGTGTCAA
TGGGTTCCTTTGCTTGTTGTATTGTGTACTCATGAACCAACAGACAAAACACCAATACTCAGGGGAGGGGAATTGGAAGGGGGTTGGATGGTAGGAGGGG
ATTAACCCAATCCGCCCTCTTGGGTGGATCAACCTAAGGAAATTTTCCCCTATAGGCAAACAAGGCCTAAATGGGCC