Detailed information on CNT30576141


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676593Oryza barthiiSetaria viridis26.3215.3792.9485forward
CNT30524011Oryza barthiiSetaria italica26.3223.6192.9485forward
CNT30101567Oryza barthiiOryza rufipogon98.7655.3899.06319forward

Expression of CNT30576141

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RFNLNTLLFTHAPIRTLIRGRQWLAGELANATPRYCDRVRRRLTARTL*

>peptide 2 (29 aa)
MTSGSGTSSLVLSKSMVQLTTAPSAAGAAA

Sequence

>CNT30576141
AACGGTTTAACCTGAACACTTTATTATTCACTCATGCACCGATACGTACACTAATTCGCGGGAGACAGTGGCTAGCCGGAGAGCTAGCAAATGCAACACC
CCGATACTGCGACCGTGTGCGACGACGACTGACGGCGAGGACGCTATAGTGGACTCTAACACATAAGCCACGCACCCGCACGGCGGCGCTCGATCTGGCT
GTCGTGGAAGGTCTTGGCGGCGGTCTCCTTGATGACGTCCGGGTCGGGCACCTCCTCGCTGGTCTTGTCGAAGTCCATGGTCCAGCTCACCACCGCGCCG
TCGGCGGCGGGTGCGGCGGCGCC