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Detailed information on CNT30576138


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108724Oryza barthiiOryza longistaminata72.0656.6895.44900forward
CNT30101145Oryza barthiiOryza rufipogon17.9362.5790.18224forward
CNT30603969Oryza barthiiOryza punctata29.5427.8990.51369forward

Expression of CNT30576138

Peptides detected in this lncRNA

>peptide 1 (53 aa)
NGDIIKILHQVLYKGLRNTTQPQHISLTIPLHLSTSHHTSLHLSVSSIVIVIT*

>peptide 2 (78 aa)
MAIPMIFLQVVQLLSQACCLPLPELLDMKTESRNAESRFAKSSNINMLCIPIETCWVINSLVFFLKKGNSITLDKKTI*

Sequence

>CNT30576138
CAAATGGAGATATCATAAAGATTCTTCACCAAGTCCTATATAAGGGGCTCAGGAACACAACACAACCACAACACATCTCACTCACCATTCCTCTTCACCT
CTCCACCAGCCATCACACTTCACTCCATCTAAGTGTTAGTAGTATAGTTATAGTTATAACCTAAATAAAAGACTCATGAGAGTCTAAGTGTGAGAGTCTA
TGTAAGAGTCCTTGTGAGAGTCNTGTACCTGTATAATTACGAACGTGTTGTACCAAGTCCTTGGTGTAATCTTCAGAAGGATCTACCTTCAACCTATCAA
GGGTTTTATGGCCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTATTGGATATGAAAACAGAG
TCAAGAAATGCAGAATCCAGGTTTGCCAAAAGCAGCAATATAAATATGTTGTGTATACCCATAGAAACATGCTGGGTTATCAACTCACTAGTTTTTTTTT
TAAAAAAAGGAAACTCAATTACATTAGACAAGAAGACTATTTGAACTGAGGAAGTTATTGTGTATGGTAAAAGAAGTAACAAGAGGCAAACAAAGAAATT
TGTTGTAAACAAATAAGGGAAGTAGTATTATCTTTCCAGTTTGAAGACAGTTTTTTTTTCCAGATAAGACGATGAGCTACCAACTCTATTGAATTTGGTA
CTCCATTATCAGTCCTCGTTTTGCGGGGTGTTACNCCNGTNNNGTAAAAANCTTGTTTGTCTAAGCAAAATGCTTCCAAGTCCCACCAAGCTAGATTAAC
TACAAAGTATCTGCAGAGTGCACAAGTCAGNTAAAAAACTTGTTTGTCTAAACAAAATGCTCCCAAGTCCCACCAAGCTAGATTAACTACAAAGTATCTG
CAGAGTGCACAAGTCAGGTAAGTGATGATTATATCATCCTGGTACAAGCTTTATTGCGGTGAAAGATAAGCAGTTAGTCTGAAATCTGTTCAGATCTGTC
AGCTGTTACCGAAGCAAAAGGTTCAATGTGAACTTAAAGGATGCAGTACTGATCCTTTTAAGAGGATTTAACACAGATTTAACAGGGTGTTCTGTATGCG
AGCTGTGATGGGATGGTTCTCTTCAGAAGCATTTTATTTTAACTAAATTCAGAAGCATTTCGATGGCATGAGGACTGTTCGATTGACAATTTGTATGTAC
ATTTCCACCGTTTACGCAGGAATTGGACCATAATTAGTTGTGTACCTGC