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Detailed information on CNT30576127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553355Oryza barthiiOryza glaberrima70.71100100840forward
CNT30370120Oryza barthiiOryza glumipatula54.9710099.23653forward
CNT30101314Oryza barthiiOryza rufipogon75.7610099.67900forward

Expression of CNT30576127

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLPDHGLLHTLAKINLHLMWMVQNLKDDPILYMSIEGSIKHT*

>peptide 2 (32 aa)
MIVYEIFICWPKFQNRETIVYSKDLIACERLE*

>peptide 3 (30 aa)
MAPGSLTFYMPSICLKYHSSNCIPNYQLHI*

>peptide 4 (29 aa)
RAVVVSSLQPHTRPPRRFLLHARDELMKE*

>peptide 5 (64 aa)
MMSASVPPGGAPGHGGARGQGFAPCFCMAVVNRQQATDDGGGVEEEIRKEIMLGSLLEGARLGK*

Sequence

>CNT30576127
GTCGTGCCGTCGTCGTGTCCTCTCTTCAGCCACACACGCGCCCACCTCGCCGATTTCTCCTCCACGCACGGGATGAACTCATGAAAGAGTGAGTAACCCG
AGAAGCTGTCAGTGAGAGAGAGAAGCCGTCGATGGGGGAGGAGGCGGCGAAGCGGCAGCAGCATCCGCGATGATGTCGGCGTCCGTTCCGCCGGGCGGAG
CCCCTGGTCACGGCGGAGCCCGCGGCCAAGGATTTGCGCCGTGTTTTTGCATGGCAGTGGTGAACCGACAACAAGCCACTGATGATGGAGGGGGAGTGGA
AGAGGAGATAAGAAAGGAAATAATGCTCGGAAGCCTACTAGAGGGTGCGCGATTGGGCAAATAAGCCTAGACATAGGGGCGTGTGTTTGGGCGAAATGCT
TGCAGCTTGCGGGGCAGCAGGAGGTGATTTTAGAGTTTGCTTCAAAAAATAAAAGTAAGTGATCATAATCTATTTGCTTGGTCATGTAGATAGAATCTTA
TAAAACTAGTTGATACCCCGCGCGTTGCTGCGGGCATAGAAGTACAATTATCAATGTGCAACATTAGTGCAAACAATCTAAATAAATTTGCTTATAATTT
GCTGAGAATCTCTTAATGATAGTTCTGATCCCACTGATGTATGATAGTATATGAAATCTTCATCTGCTGGCCGAAATTTCAAAATAGAGAAACAATAGTA
TACAGTAAAGATCTGATTGCTTGTGAACGTTTAGAATGAAAGAAACAAAAGCCTAAAAAATTATATATTTATTAGGCATCATTACTATAATTCATAAAAT
TGTATGCTTCCAGATCATGGATTGCTGCATACCTTAGCAAAAATAAACCTTCACCTAATGTGGATGGTTCAAAATCTAAAAGATGACCCAATATTATATA
TGAGCATTGAGGGAAGCATCAAGCATACATAGGAGTTGGGCACTTGACATCCGGATCACTTATAGTATTTGTTAAGAGATTACCAACAAAATAATTCCAT
TTAATCAATTGAAATGTGAATGGGATCATGGCACCTGGAAGCTTAACTTTCTATATGCCCTCAATCTGTCTGAAATATCATAGCTCAAATTGTATACCAA
ATTACCAACTGCATATATGACTTATGAAACAAAAGCAGTTACAATTAGATGGAATAGCATAAAACAAATATGTGCAGATTGATCTGGC