« Back to Oryza barthii search


Detailed information on CNT30576114


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370025Oryza barthiiOryza glumipatula73.0688.8399.75811forward
CNT30107111Oryza barthiiOryza longistaminata67.0393.8297.45744forward
CNT30116461Oryza barthiiOryza nivara91.889.1599.511019forward

Expression of CNT30576114

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLSPSSYRPRQRYIVPTRSRKFLSSLMIPM*

>peptide 2 (57 aa)
AGGVVRRGGGRDSARRGGASASCILFTLQLTMNSIHRLPPSTSCWQHTFLSAASCPS*

>peptide 3 (45 aa)
MGDWEPALLDVSLALILSPASTIYSANQVQEVLKFFDDTHVADLL*

>peptide 4 (35 aa)
MGFFTAKFCGGFRVIVAPFFSTIYSMKLTHRCQFI*

Sequence

>CNT30576114
GCGCCGGCGGCGTAGTGCGGCGCGGTGGTGGTAGGGACAGCGCGCGGCGAGGTGGAGCGTCGGCGTCGTGCATCCTCTTCACTCTTCAGCTCACCATGAA
TAGCATCCACCGTCTCCCCCCATCGACCAGCTGCTGGCAACATACGTTTCTATCAGCAGCTAGCTGTCCTAGCTAGCCTCATCAGTTCAGCGCATCGATG
GGAGATTGGGAGCCGGCACTGCTCGATGTCTCTCTCGCCCTCATCTTATCGCCCGCGTCAACGATATATAGTGCCAACCAGGTCCAGGAAGTTCTTAAGT
TCTTTGATGATACCCATGTAGCTGACCTTCTTTGATGATACTTTGTTCCCATATCTGATTGGTTGATATACATTGCAATGTGTAGGCACCAAACAAAGCA
GTTGTTGTGTTCCTTTGCATAGAGATTTTTACATCATCTCTGATATGTCTCATGTTTCTGTTAATTATCTCCTATCCCAGTCCACTTTCATGGGCTTTAA
AGCTGCACTGCCAGTAAATTGAGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTCGTGAGTTCCTTGATGATCCCTGTTTGTTTC
CTGTTGATTACAAGTTAATAGATGCTACACTAAGGCCTTGACTTTGCAACCTTCAGTCTCTAATTGTCTGCATGCATCATTTACTCCAGAGTTCTAATTA
ACAGGATTTTCAGGTGAAGGCCATCTGTGGATCCAAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTGGCTGTTTTTCTCCATTTCATATAAGCTTTT
TGAAAATATCCCATATTAAATATTTCTATTTGAGAAACTATCTGGATACTTTGATTAACCCCCATTAGATGGGTTTTTTTACAGCGAAATTTTGTGGCGG
GTTTCGTGTAATTGTTGCCCCTTTTTTTTCCACTATATATTCAATGAAATTGACACACCGGTGCCAGTTCATTTAAAAAAAAAATCTGTGACGGGTTTTA
TACTTTACATATTTTCTGTTGCAGATGAGCTGAAAAACTCTTAAAATTGGATAGCTCAAATATATGTAATATGTAATTGTATTTCTAAAGCTAGAGCCAG
ATCAATCTGC