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Detailed information on CNT30576097


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101509Oryza barthiiOryza rufipogon7.9727.2498.6373forward
CNT30116568Oryza barthiiOryza nivara24.4536.1390.18224forward

Expression of CNT30576097

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSLTCGPNESEPHLSATHVPLILSNFTSEDSKVW*

>peptide 2 (30 aa)
AYYDTYRHVMTPANQCSGSPTVYRCSHVMT*

>peptide 3 (41 aa)
MLFLKLISLANAYPPSLLHAKRNTNKTSKKFFLKKENACHH*

>peptide 4 (41 aa)
MVTCRPSLQPPTNHPPLKTPHKYCEQKKTKPKQTTPKSKGK*

Sequence

>CNT30576097
GCATACTATGACACCTATAGACACGTTATGACACCAGCGAATCAATGTTCTGGATCCCCCACTGTCTACCGATGTAGTCATGTGATGACGTAAAAACAGG
AAAAAAAATGCTCTTTCTAAAACTCATTTCCTTGGCAAACGCATATCCACCTAGTCTTTTGCATGCAAAACGAAACACAAACAAAACTAGTAAGAAATTT
TTTTTAAAAAAGGAGAATGCATGTCATCACTGACATGTGGACCCAATGAAAGTGAGCCCCACCTATCAGCAACCCATGTACCTCTAATTTTATCTAATTT
TACGTCAGAGGACTCCAAGGTATGGTAGAAAAAAACACCCAAAAACCCCCTAGGCCCTAGCAGCACAAACGTCCAATGGTTACCTGCCGGCCGTCCCTTC
AACCACCAACAAACCACCCTCCTCTCAAAACCCCCCATAAATATTGCGAACAAAAAAAAACAAAACCAAAACAAACCACACCAAAAAGCAAAGGAAAGTG
AAAGCAAAGCACCCAAAAAACCCCCAAAAAAAAAAAAACCCACTCCTACCACAACACAACACTACAACACTACACTAACGCTCACACACACTAGGCTCCA
ACACCAACCCAAAGCTCTCTCGAAAGCGAACAAAACAAACGCCCACACACACACGGTGACACGCACCCCGACGCCCCCCCTCCCCTTTGCTTCTCCGCCT
CCGCCTCCGCCTCCCTCCTCACGCACGCCAAAAAATTTCCCTCTTTTCCTCATTCTCCGCCTCCCTATAATCTCAATCCACCACCACCGTCCTTCTCGCT
CTCGCTCTCGCTCTCGCTCTCGCTGCTGCTCCTGCAGGTCCCCCAATCCCGTGGGCGTGGGGGGGTGTTCGGGGTTCTTGCTTTGCTGGGATGGTCGACG
CCTAGGTGTTTTGCTT