Detailed information on CNT30576076


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002283, E-value = 8e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678383Oryza barthiiSetaria viridis4.6160.5396.14207forward
CNT30524653Oryza barthiiSetaria italica17.7366.5396.61797forward
CNT30548565Oryza barthiiIpomoea triloba3.6534.3194.51164forward
CNT30504974Oryza barthiiNicotiana attenuata7.964.298.59355forward
CNT30221870Oryza barthiiHordeum vulgare18.4466.9196.26829forward
CNT30553404Oryza barthiiOryza glaberrima28.7791.5799.151293forward
CNT30154718Oryza barthiiPrunus persica8.0852.3895.32363forward
CNT30418817Oryza barthiiPapaver somniferum2.2948.5895.15103forward
CNT30147862Oryza barthiiBrachypodium distachyon3.254.7598.61144reverse complement
CNT30104593Oryza barthiiOryza rufipogon8.92100.2599.75401reverse complement
CNT30116696Oryza barthiiOryza nivara37.1342.0999.821669reverse complement

Expression of CNT30576076

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHGILETLYFTKEDTFHFSDRNXNSGWFRLQSEEIRSMVK*

>peptide 2 (31 aa)
MFSSRPGSPGSTTVRPNHSQNLSLILAQKER*

>peptide 3 (31 aa)
MVKGTASVHTLGRRLNTKQESTLAFVLLPMD*

>peptide 4 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

>peptide 5 (36 aa)
MFFKTTRKNANSLGELKISTFRLWRERIGLISSIHL*

>peptide 6 (44 aa)
MPSRRSDLLNAAISVFLCSPPPLDTLVVDHKRSILSRNSYRKMD*

>peptide 7 (42 aa)
MMFSWSFRMISYTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 8 (41 aa)
MNVLIDRVRINQITNSKKFFRFVSYINYRQKVLSEQLVISK*

>peptide 9 (96 aa)
MNERQKYRTYTLSQNIYLLSIRQEGQXKDNGYGTQVLALLENEALSVQTYEITYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQLIALG*

>peptide 10 (90 aa)
MKGRNIGHTLYHRTSICFLFDKKDXEKIMDMEHRSWHYWKMKLSQFKHMRLLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIN*

>peptide 11 (38 aa)
MVEVRVHLGYSEKRRNPRITPYIFTAKGKHKRKGINAIS

>peptide 12 (36 aa)
MKSGEQSIARINPLPVLERKAEQALEWSKGLLRYIH*

Sequence

>CNT30576076
CCGTTTGCTACGAACTTGGTACAAGATAAATCGTAAAACGTTAGGACTTAATTAACGCTGAAAAACACGCGTGTTAGAGTCCAAACCGATTCATTCTCCA
TGAGACCATGACAAATTGGCACCAACACAAACGTTTCGGGCAGTTATTATTGAACAAACTACCACCACAAATTATCTACTATGTATTATAGAAATTATCG
GGACTGGTGAGAGCCGGCGATGCACGGAATTTTGGAAACGCTCTACTTCACTAAGGAAGATACGTTTCACTTTTCCGATCGGAATTTNAACTCTGGCTGG
TTCAGGTTACAGTCAGAGGAAATAAGAAGTATGGTAAAATGAATGAAAGGCAGAAATATAGGACATACACTTTATCACAGAACATCTATTTGCTTTCTAT
TCGACAAGAAGGACAANGAAAAGATAATGGATATGGAACACAGGTCCTGGCACTATTGGAAAATGAAGCTCTCTCAGTTCAAACATATGAGATTACTTAC
CCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTATCAACTAATAGCGCTAGGTTAACTATTTAATATCTCTAGCGTATTCGCTCGTACCCTTGATGGTCTGGATTCATCATTTCTTTTGATCAAATA
GTTAGTAAAGAAAAAGGAAAAGGGTAAATTAAGTAGGGCGGTCCACAACAAGGCTACTGCTACAGTAGGGCCACAACAAGACTACTGCTACAGTACGAAA
CGAAAGAAATGAAAAGCGGAGAGCAGAGTATAGCTAGGATCAATCCCCTCCCTGTTCTAGAAAGAAAGGCCGAACAAGCGTTGGAATGGTCAAAGGGACT
GCTTCGGTACATACATTAGGAAGGAGGCTAAATACAAAACAAGAGTCTACGCTCGCTTTTGTTCTGCTGCCAATGGACTAAAGACTTTCCCAACCCATAT
AACACTGTCTTTGACCGACTGGCCTAGTAGGTAAAAGAGGAGTAAGAATAGCAATGCCTCCACTCCAAATAATGTGAGTTCGGTTTGGCCTGGCAGGAGC
TTTTCTTGGTTGGCCGGGACGAGAGGATCACAGGCCGAAATCCATCAAAGAATCTTCGATCTGATAGAAAAAAGGTATACAGACATACATAAGTAAGTAA
GTCCCGCTCAGGTCAAATCAAGGGAAAATGGTATAAAGCCTCTGCATTAACTTGACATGAAAGTGAAAGGGTCCGATCCTGACTCCCCAAAAGCAGTAAG
TAACGGTCACTAAGCCAATGATGCAGGAAATGCACGCTAGGAGAAGTTTGGCATGCTTAGTTAGTGGGAGCACTTGAGGAAGACTAAAGCTTGAAAGGGG
CTTCACTTCTGGGACTTCTTGGCTAAGAGGATGCTTGCTATAAGAAGTATAAGTAGGCGGGTAACGTTTCATTTCTTCCATAGAATCTCAATATGGCGAG
AATGAAGCAGGGCAATTAAAGCTTGAATTCAATTCAATAGTCAAGGTAGAGTAGAAAGGGGGGGCGTGCTACTTAACGCAACTGCACTTGGCTAAGAAAA
TAGGATAGAGCAGAGAGAGCCTAATCTCCCGCTTGGTCATTGAGCAGTGAGCCGAGGTGCGATGAGCGGTTGAGTCACGCACTACAAGATGGCTGAAGGT
ATCTGCCTGCCCCTATCTCGTCTGCTTCTACTTTGCGGAGACTTGCTTTGACGAGTAAACATGTACCAGTGGTATCGCTTTCCGTTTTGAGTTATTCCCG
GTAATTAAGCACCTTCTATACGCCTTGTTCTTGGAAAGGCAAAACCATCAAAGCGTTGATTAAAGAAAAGTAACTCCCATCCTATAAGACCTCGGATCTC
CCCTTCGTCTGCCAGTGCCTGGTCAATCATGGCAATAGCTAGCTATCTGCTGATGCCAGAAAGGTCAAGTGAGACAGCCCCGAGCCAGCCCTCCTATTAA
TAGGGTTGCTTTTTTCACCAGGTTCCTTAGTTTATAAAATCCGAAAGGTCGATCGCGAAGGAAAATGGAAAAAGTATTACTTTTGCCACAGACTGGACAG
AAAGTTTCCTTTTTCTGCACCCAGTTTTTTCCTTTTTACGAGGGAAAGTGAATTTTCAGTACTTTTCGCTATGGCTGGAACAAATGTTTTTTAAAACGAC
CCGGAAAAATGCCAATTCCTTAGGCGAATTAAAAATTAGTACTTTTCGCCTATGGCGGGAAAGAATTGGTTTAATTTCTTCCATCCATTTATAGAATGGG
TCCAAAAAAGGTAAAAAATCGGCTAAAAAAGCGAAAAAACTAGTTCCGACATAGTGGGAAAGTGGTAGTTTTTTCATTTTGCTTGTAAATCGGCTCTTTT
TGGCATCCCAGTTCTGAACTTTTTCATCTCGCCTAGTGGAACTTGAGACTTTTTCCAGTATCTTTATCCAGCAGCAGGACTTTCACTACTTTCCCAAGTA
AAGCTAGTGTTAAGAGACTGGATTGTAGAAGTGTTGACTGACTTGACTGGAAATATAATATGGAAAGACTGATGGACTGACTGAAGTGGCTATTGACTTA
AGTGGCTATTTCCTGATTCCGATATGGCGTCCTGAATCCGATATTGCTTGATTGTCTGTTGATGCCCAGCCGAAGAAGTGACTTGCTTAACGCAGCAATT
TCTGTTTTCTTGTGCTCTCCACCTCCGCTTGACACTCTCGTAGTAGATCATAAGAGAAGTATTCTTTCAAGAAATTCGTATAGAAAGATGGACTAGCTCG
AGAACAAGCAACGGATTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTCCTTGGCTTCAAACAATCGATTGAATCTGGATTCCT
TTGCTTATCCTTCCTGGCTATAGTCTCTCTTGTGCCTTCGGCAGTTCAGTTAAAGATTTCTGTATCAGCAGTTTGTTTCCCCATTTGCTCAAAGAACGCA
TAAAACCTGTTCCCTCACCGTATCAAAAGATCAAGCGGAAGAGTCCTCTTCTTCAAGAAGAGTTTTTTCATTTCACTCTTCCGCAGCAATGCCCGGGCAA
GAAAACAATATGAGCAAATCCGCAAAACAATATCATAGCAAACGGTATGTGCTGGTTGGATAGAGCAATCAGTAGTTGACGTTCGAACCAATCTTCTCTC
TAGTAGACTTTAGATTCAGTCGTCCGTTTGTTTTGTTTTGAATTGACATAGAGAAATCTTCCCACTACGTAATTAAGGAATAGGTGGCGAAGGCCCTTGG
CGGACTATATATAAAGGAAAGGGGTTATTTTTCCTTTACGGCAATAAGAGCTGATTCCCTTGCTTGTAGTTTTTGATCGATGGAGTGTATTTAACATATT
TAAGAGTGGTTAGGAGAGAGAATCAATGTTTAGTAGTAGGCCCGGTTCACCAGGTTCTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGATC
CTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTAG
TCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGG
TGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCG
GGTAAAGGCTGACCAAGCCAATGATGTTTAGCTGGTCTTTTCGGATGATCAGCTACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGT
GGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCA
TGACAGGACTCGAGGAAGAAGCCCCGGCTAAATAAGATATATTATGTTATACCATAATAAAAGAAATGATTCTGATGTGAGATGAGACAATTTCTGATTC
TGATGAAACAACCATCTTTTATGCAATTTCATGATTCTTAACTGAGAGTTCCCGTTCTTCCTTTAACTATCTTTCTTTTTTCACTAAAGGTTATGAATGT
TTTAATAGATCGAGTCAGAATAAATCAAATCACTAATTCCAAAAAGTTTTTCAGGTTTGTGTCGTATATCAATTACCGGCAGAAGGTTCTATCGGAACAA
TTAGTTATTTCAAAGTAACTCGTAGATTTATTTTGGCAATAGGAGAATGAAAAAAAGATCTGGGATTGAAAGAAACAGATGGTTGAAGTCAGAGTTCATT
TAGGTTATAGTGAAAAAAGAAGGAATCCTAGAATAACTCCTTACATCTTTACAGCAAAGGGCAAACACAAACGTAAAGGTATAAACGCCATCTCG