Detailed information on CNT30576052


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694539Oryza barthiiOryza sativa100.0979.3997.481152forward
CNT30553561Oryza barthiiOryza glaberrima99.6563.7998.871147forward
CNT30116585Oryza barthiiOryza nivara99.8394.3398.091149forward

Expression of CNT30576052

Peptides detected in this lncRNA

>peptide 1 (42 aa)
INIYSFFISSVLLELFPMCCHTFFRCHAYFLFGWCLMFCCVR*

>peptide 2 (30 aa)
MVLFLVLLPWGYWIWILELVFSIFKFPNCI*

>peptide 3 (66 aa)
MRRRWRTWCSHRGDDRGTSHPDIIMVSFYVRTRHGVRPPHHTAHACLLRHIAGSFAKHEQMSAMLP*

>peptide 4 (57 aa)
MGFVHHTILPMPAFYAILQAASPSMSRCLLCCHSTNEVPTTTFEDLNEAHSVRLGNQ*

>peptide 5 (45 aa)
SIYILSLFLQCYLSCFLCVVIPFSAAMHISCLVGVLCFVVFDRCT*

Sequence

>CNT30576052
ATCAATATATATTCTTTCTTTATTTCTTCAGTGCTACTTGAGTTGTTTCCTATGTGTTGTCATACCTTTTTCCGCTGCCATGCATATTTCTTGTTTGGTT
GGTGTCTTATGTTTTGTTGTGTTCGATAGGTGTACGTGAGAAATGCGATGGCGGGATACTGGGGTAATGTGAGTGTGCGACCCGGACAGTGAAGGGGACG
GACCGTAGGTGCGGTATGAGGCGACGTTGGCGTACCTGGTGCAGTCACAGGGGTGACGATCGAGGAACCAGCCACCCGGACATCATCATGGTTTCCTTCT
ACGTACGTACTCGACATGGGGTTCGTCCACCACACCATACTGCCCATGCCTGCCTTCTACGCCATATTGCAGGCAGCTTCGCCAAGCATGAGCAGATGTC
TGCTATGCTGCCATAGCACCAACGAGGTTCCTACGACCACATTTGAGGATTTAAATGAAGCACATTCTGTAAGGCTCGGAAATCAATAGAAGAATAGAGG
GTGTGTTTAGTTCACGTCAAAATTGAAAGTTTGGTTGAAATTGGAACGATGTGATAGAAAAGTTGGAAGTTTATGTGGGTAGAAAAGCTTTGATGTGATG
GAAAAGTTGAAAGTTTGAAGAAAAAAAATTGGAACTAAACAAGGCCAGAACAAGGTAGTAGGTGCGTGAGTCGGGTCACATGCGAGGAGGAGCAGGGACG
TGAAGCGTGAGTGGCAGGAAAAGATGGCGCTGGTGTTGAGGTCTCCAACGGTATTACTCGAACGAGCAGTTGGGGCCCTGGGAGCTGCGGGGTAATTGCC
GCGAAAATGGTGCTTTTCCTTGTGTTATTGCCGTGGGGTTATTGGATTTGGATTTTGGAGTTAGTCTTTAGTATTTTCAAATTTCCTAATTGTATCTAAT
TATCTCTATGGTTGGGATTGTTTTCTCTGCAGAAGGACAAAATAGTGTGCTAGCGTCATAGTTGAGCACTAAACCTTAACTTCACACTGATACTTTTTGC
TCAATTGTTGTATGTCATTTTATACAAATGTTTAGGATATATATTTGGCATTTAGTAGTGAACTTTGCGAGTTAAGCGAATTTTGCTATTTGATTTACAC
ATGTTAATCCTTTCTGTCTTGATGTATGGAGCTACTGCACAAGAAATGGCC