CANTATAdb - search

Detailed information on CNT30576050

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553359	Oryza barthii	Oryza glaberrima	91.69	79.01	100	640	forward
CNT30370038	Oryza barthii	Oryza glumipatula	87.54	100	99.18	611	forward
CNT30108937	Oryza barthii	Oryza longistaminata	22.49	16.27	84.08	157	forward
CNT30101395	Oryza barthii	Oryza rufipogon	82.52	100	99.65	576	forward

Expression of CNT30576050

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMSASVPPGGAPGHGGARGQGFAPCFWSRLGG*

>peptide 2 (37 aa)
MAVVNRQQATDDGGGVEEEIRKEIMLGSLLEGARLGK*

Sequence

>CNT30576050
GTCGTCGTGTCCTCTCTTCAGCCACACACGCGCCCACCTCGCCGATTTCTCCTCCACGCACGGGATGAACTCATGAAAGAGTGAGTAACCCGAGAAGCTG
TCAGTGAGAGAGAGAAGCCGTCGATGGGGGAGGAGGCGGCGAAGCGGCAGCAGCATCCGCGATGATGTCGGCGTCCGTTCCGCCGGGCGGAGCCCCTGGT
CACGGCGGAGCCCGCGGCCAAGGATTTGCGCCGTGTTTTTGGTCGCGATTGGGGGGTTGACGAGTTGTCCCGATACAGCATGGCAGTGGTGAACCGACAA
CAAGCCACTGATGATGGAGGGGGAGTGGAAGAGGAGATAAGAAAGGAAATAATGCTCGGAAGCCTACTAGAGGGTGCGCGATTGGGCAAATAAGCCTAGA
CATAGGGGCGTGTGTTTGGGCGAAATGCTTGCAGCTTGCGGGGCAGCAGGAGGTGATTTTAGAGTTTGCTTCAAAAAATAAAAGTAAGTGATCATAATCT
ATTTGCTTGGTCATGTAGATAGAATCTTATAAAACTAGTTGATACCCCGCGCGTTGCTGCGGGCATAGAAGTACAATTATCAATGTGCAACATTAGTGCA
AACAATCTAAATAAATTTGCTTATAATTTGCTGAGAATCTCTTAATGATAGTTCTGATCCCACTGATGTATGATAGTATATGAAATCTTCATCTGCTG