Detailed information on CNT30575998


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370061Oryza barthiiOryza glumipatula46.9816.1698.9365forward
CNT30101490Oryza barthiiOryza rufipogon50.1923.1299.23390forward
CNT30116419Oryza barthiiOryza nivara40.0319.47100311forward

Expression of CNT30575998

Peptides detected in this lncRNA

>peptide 1 (58 aa)
SPRCLRARSLSFVHSRFLVLSLILSSERERDPSFGSIFSPWIQPMKISTNIIYGANDR*

>peptide 2 (59 aa)
MSTWVKGSCSLKDILVVINRICLGMQKLEICALYDVCSSGALCFPLFQYETYSLLEGSF*

>peptide 3 (56 aa)
FSSLSPRALSLFRSLSLSCSLSHSLQREGERSIVWIDFLPLDSTDENFYKYHIWCQ*

>peptide 4 (45 aa)
FLLVVSARALSLSFTLAFLFSLSFSPARGREIHRLDRFSPPGFNR*

>peptide 5 (40 aa)
MTAMEIDVNVGEGIMFIEGHTSCDQQNMFRDAKVRDMCTV*

>peptide 6 (38 aa)
MVPMTDEIFNKDQIWCIIIVFMRNYSVMFDEIFYEDQI*

Sequence

>CNT30575998
TTTCTCCTCGTTGTCTCCGCGCGCGCTCTCTCTCTTTCGTTCACTCTCGCTTTCTTGTTCTCTCTCTCATTCTCTCCAGCGAGAGGGAGAGAGATCCATC
GTTTGGATCGATTTTCTCCCCCTGGATTCAACCGATGAAAATTTCTACAAATATCATATATGGTGCCAATGACAGATGAAATTTTCAACAAAGATCAGAT
ATGGTGCATAATAATAGTTTTCATGAGAAACTACAGTGTTATGTTTGATGAAATTTTCTATGAAGATCAGATATGATGCACAATAATAGATTCTGCTTTG
TTTTTGCTTAACAAGTGCTGCCCGGGACATAACTCTTATGTGTCTACTTATTCCTTTCATTAAAACAGAAAAGGAGAACTAGCCAGGGCCTTGGAGCTGC
TTGGATTGTGGGATGACAGCAATGGAAATTGATGTCAACGTGGGTGAAGGGATCATGTTCATTGAAGGACATACTAGTTGTGATCAACAGAATATGTTTA
GGGATGCAAAAGTTAGAGATATGTGCACTGTATGATGTATGTTCTTCTGGTGCCCTATGTTTCCCCTTATTTCAATATGAAACTTATAGCTTATTAGAAG
GATCTTTTTGAATCAAAAGTCATGTTTCCCTACTCAGTACTGCTTGATGTAAAGGAATCCAAAATTTCATGCAATTTCCCTAAGAATTTTCAAATCTGAG
TTGTTTTTGTTTGATTTTGATACTGTATGGCATATCCGGTGCAATCAACAACAAAAAGGTAAAGTGGAACTTACCTG